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WormBase Tree Display for CDS: Bm8361a

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Name Class

Bm8361aSMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons1178
593864
9411084
12411433
15861822
19282157
22602440
25232647
43114319
DB_infoDatabaseTrEMBLUniProtAccA0A0J9YCM5
UniProtUniProtAccA0A0J9YCM5
AlphaFoldentryA0A0J9YCM5
Protein_idBm_v4_Chr4_scaffold_001CDQ066501
DB_remarkBMA-CFIM-2 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR034772 (CPSF6/7 family), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR035979 (RNA-binding domain superfamily), IPR000504 (RNA recognition motif domain)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
IsoformInferred_automaticallyxace
VisibleGeneWBGene00228622
Corresponding_transcriptBm8361a.1
Corresponding_proteinBM23758
Matching_cDNAAI784883Inferred_automaticallytranscript_builder.pl
brugia_GG6321|c7_g1_i9Inferred_automaticallytranscript_builder.pl
brugia_GG6321|c7_g1_i6Inferred_automaticallytranscript_builder.pl
AI083333Inferred_automaticallytranscript_builder.pl
brugia_GG6321|c7_g1_i3Inferred_automaticallytranscript_builder.pl
brugia_GG6321|c7_g1_i7Inferred_automaticallytranscript_builder.pl
brugia_GG268|c0_g1_i2Inferred_automaticallytranscript_builder.pl
brugia_GG6321|c7_g1_i5Inferred_automaticallytranscript_builder.pl
brugia_GG6321|c7_g1_i8Inferred_automaticallytranscript_builder.pl
brugia_GG6321|c5_g1_i1Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:000007830.4762From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
30.7939From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
45.2885From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
53.3011From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
83.209From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
89.1619From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
90.3775From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
WBls:0000080128.342From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
134.286From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
256.809From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
257.899From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (23)
WBls:000008250.766From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
57.561From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
60.7198From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
62.224From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
65.0254From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
WBls:0000083 (80)
WBls:0000092143.929From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
161.171From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:0000094118.173From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
127.517From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:0000097161.969From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
178.272From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
293.133From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
302.894From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
309.196From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
60.1063From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:0000662219.749From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
237.709From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:0000663174.004From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[20121113 js] this isoform is based on TSL sequences on RNASeq readsCurator_confirmedWBPerson615
Methodcurated