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WormBase Tree Display for CDS: Bm8351

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Name Class

Bm8351EvidenceCurator_confirmedWBPerson615
Inferred_automaticallymake_isoforms.pl
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (17)
DB_infoDatabaseTrEMBLUniProtAccA0A1U7F3Q0
UniProtUniProtAccA0A1U7F3Q0
AlphaFoldentryA0A1U7F3Q0
Protein_idBm_v4_Chr4_scaffold_001CRZ222451
DB_remarkBMA-SEC-23 protein; contains similarity to Pfam domains PF00626 (Gelsolin repeat), PF04810 (Sec23/Sec24 zinc finger), PF04811 (Sec23/Sec24 trunk domain), PF04815 (Sec23/Sec24 helical domain), PF08033 (Sec23/Sec24 beta-sandwich domain); contains similarity to Interpro domains IPR006900 (Sec23/Sec24, helical domain), IPR036465 (von Willebrand factor A-like domain superfamily), IPR012990 (Sec23/Sec24 beta-sandwich), IPR006896 (Sec23/Sec24, trunk domain), IPR029006 (ADF-H/Gelsolin-like domain superfamily), IPR036180 (Gelsolin-like domain superfamily), IPR036174 (Zinc finger, Sec23/Sec24-type superfamily), IPR037364 (Protein transport protein Sec23), IPR036175 (Sec23/Sec24 helical domain superfamily), IPR006895 (Zinc finger, Sec23/Sec24-type), IPR007123 (Gelsolin-like domain)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
VisibleGeneWBGene00228612
Corresponding_transcriptBm8351.1
Bm8351.2
Corresponding_proteinBM23428
Matching_cDNA (12)
RNASeq_FPKMWBls:000007848.546From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
51.44From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
59.8288From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
62.9285From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
65.1316From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
66.3397From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
74.019From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
WBls:0000080102.085From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
166.359From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
167.064From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
97.8675From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
WBls:0000081 (23)
WBls:0000082104.399From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
109.449From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
141.162From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
145.708From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
160.974From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
WBls:0000083 (80)
WBls:000009280.9524From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
84.0598From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009488.9931From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
94.6337From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:0000097101.885From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
118.283From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
128.969From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
59.1739From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
72.1395From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
91.553From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:0000662117.56From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
127.258From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:0000663139.326From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[20120807 js] this gene is based on RNASeq data and BLASTX alignmentsProtein_id_evidenceWP:CE27230
[131112 pad] Renamed from Bm13927b as this is a single Isoform locus.Curator_confirmedWBPerson1983
Methodcurated