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WormBase Tree Display for CDS: Bm7542

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Name Class

Bm7542EvidenceCurator_confirmedWBPerson615
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (23)
DB_infoDatabaseTrEMBLUniProtAccA0A0H5S453
UniProtUniProtAccA0A0H5S453
AlphaFoldentryA0A0H5S453
UniProt_GCRPUniProtAccA0A0H5S453
Protein_idBm_v4_Chr4_scaffold_001CRZ232111
DB_remarkBMA-XPO-1 protein; contains similarity to Pfam domains PF03810 (Importin-beta N-terminal domain), PF08389 (Exportin 1-like protein), PF08767 (CRM1 C terminal), PF18777 (Chromosome region maintenance or exportin repeat), PF18784 (CRM1 / Exportin repeat 2), PF18787 (CRM1 / Exportin repeat 3); contains similarity to Interpro domains IPR040485 (Exportin-1, repeat 3), IPR013598 (Exportin-1/Importin-beta-like), IPR011989 (Armadillo-like helical), IPR045065 (Exportin-1/5), IPR001494 (Importin-beta, N-terminal domain), IPR014877 (Exportin-1, C-terminal), IPR041235 (Exportin-1, repeat 2), IPR016024 (Armadillo-type fold), IPR041123 (Chromosome region maintenance repeat)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
VisibleGeneWBGene00227803
Corresponding_transcriptBm7542.1
Corresponding_proteinBM27507
Matching_cDNAIsoSeq_brugia_PB_5111_2Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_5111_20Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_5111_6Inferred_automaticallytranscript_builder.pl
brugia_GG1063|c13_g1_i1Inferred_automaticallytranscript_builder.pl
brugia_GG1063|c9_g1_i3Inferred_automaticallytranscript_builder.pl
brugia_GG1063|c9_g1_i2Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_5111_16Inferred_automaticallytranscript_builder.pl
brugia_GG1063|c9_g1_i1Inferred_automaticallytranscript_builder.pl
Brief_identificationImportin-beta N-terminal domain containing proteinAccession_evidenceTIGRBm1_24525
RNASeq_FPKMWBls:0000078100.724From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
101.643From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
104.877From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
111.189From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
114.782From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
162.602From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
164.085From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
WBls:0000080205.48From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
212.407From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
234.602From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
235.798From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
WBls:0000081 (23)
WBls:0000082190.581From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
193.669From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
200.687From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
254.95From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
265.837From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
WBls:0000083 (80)
WBls:0000092208.075From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
208.661From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:0000094177.284From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
185.753From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:0000097140.291From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
179.466From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
197.308From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
202.895From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
203.589From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
223.747From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
WBls:0000662169.481From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
182.225From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:0000663136.063From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[131112 pad] Renamed from Bm7542c as this is a single Isoform locus.Curator_confirmedWBPerson1983
Methodcurated