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WormBase Tree Display for CDS: Bm7405

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Name Class

Bm7405SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (22)
DB_infoDatabaseKEGGKEGG_id6.1.1.9
TrEMBLUniProtAccA0A0H5S931
UniProtUniProtAccA0A0H5S931
AlphaFoldentryA0A0H5S931
UniProt_GCRPUniProtAccA0A0H5S931
Protein_idBm_v4_Chr4_scaffold_001CRZ252081
DB_remarkcontains similarity to Pfam domains PF00133 (tRNA synthetases class I (I, L, M and V)), PF08264 (Anticodon-binding domain of tRNA ligase); contains similarity to Interpro domains IPR013155 (Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding), IPR002300 (Aminoacyl-tRNA synthetase, class Ia), IPR002303 (Valine-tRNA ligase), IPR009080 (Aminoacyl-tRNA synthetase, class Ia, anticodon-binding), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR009008 (Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusPartially_confirmed
VisibleGeneWBGene00227666
Corresponding_transcriptBm7405.1
Corresponding_proteinBM30309
RNASeq_FPKMWBls:000007813.5551From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
15.2541From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
17.2838From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
20.0791From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
24.2044From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
25.1246From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
27.1824From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
WBls:000008025.1344From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
31.2297From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
36.2172From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
36.7062From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (23)
WBls:000008214.7524From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
16.017From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
16.6017From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
21.0262From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
21.2976From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (80)
WBls:000009239.3817From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
40.6245From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009429.2392From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
30.6213From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:000009720.7685From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
23.0536From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
23.5373From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
28.5529From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
34.0586From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
9.83611From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
WBls:000066228.8732From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
33.8777From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066323.2595From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[131112 pad] Renamed from Bm7405c as this is a single Isoform locus.Curator_confirmedWBPerson1983
Methodcurated