Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: Bm7239

expand all nodes | collapse all nodes | view schema

Name Class

Bm7239EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (12)
DB_infoDatabaseKEGGKEGG_id6.1.1.1
TrEMBLUniProtAccA0A0H5SN08
UniProtUniProtAccA0A0H5SN08
AlphaFoldentryA0A0H5SN08
Protein_idBm_v4_Chr4_scaffold_001CRZ250771
DB_remarkBMA-YARS-1 protein; contains similarity to Pfam domain PF00579 (tRNA synthetases class I (W and Y)); contains similarity to Interpro domains IPR002307 (Tyrosine-tRNA ligase), IPR002305 (Aminoacyl-tRNA synthetase, class Ic), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusPartially_confirmed
VisibleGeneWBGene00227500
Corresponding_transcriptBm7239.1
Corresponding_proteinBM46215
Matching_cDNAbrugia_GG4100|c5_g1_i1Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:000007819.3374From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
21.4741From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
21.7417From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
23.4926From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
23.8398From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
5.64715From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
9.38237From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
WBls:000008037.8138From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
40.963From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
50.5151From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
52.9907From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (23)
WBls:000008211.8013From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
13.754From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
14.4091From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
25.2457From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
26.1657From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
WBls:0000083 (80)
WBls:000009240.9419From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
44.9518From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009412.2952From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
16.5443From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:000009718.9631From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
23.0099From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
46.6419From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
59.4524From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
62.0541From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
67.4083From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
WBls:000066218.151From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
19.776From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:000066318.3056From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Last_reviewed09 Jul 2018 16:55:45WBPerson4055
Remark[131112 pad] Renamed from Bm7239c as this is a single Isoform locus.Curator_confirmedWBPerson1983
[180709 mh6] This CDS has been updated based on the RNAseq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated