Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: Bm7001

expand all nodes | collapse all nodes | view schema

Name Class

Bm7001EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons191
708779
10271308
16191773
20322172
22492450
25902717
DB_infoDatabaseTrEMBLUniProtAccA0A0H5S7Q7
UniProtUniProtAccA0A0H5S7Q7
AlphaFoldentryA0A0H5S7Q7
UniProt_GCRPUniProtAccA0A0H5S7Q7
Protein_idBm_v4_Chr4_scaffold_001CRZ247281
DB_remarkcontains similarity to Pfam domain PF07818 (HCNGP-like protein); contains similarity to Interpro domain IPR012479 (SAP30-binding protein)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
VisibleGeneWBGene00227262
Corresponding_transcriptBm7001.1
Corresponding_proteinBM00267
Matching_cDNAW18211Inferred_automaticallytranscript_builder.pl
AI508147Inferred_automaticallytranscript_builder.pl
AA842229Inferred_automaticallytranscript_builder.pl
brugia_GG4641|c12_g1_i3Inferred_automaticallytranscript_builder.pl
AI812287Inferred_automaticallytranscript_builder.pl
Brief_identificationTranscriptional regulator protein HCNGP, putativeAccession_evidenceTIGRBm1_27655
RNASeq_FPKMWBls:000007817.7348From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
19.0332From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
20.1935From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
20.9156From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
30.4374From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
38.289From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
43.9034From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
WBls:000008033.9928From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
46.429From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
49.7286From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
49.823From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (23)
WBls:000008225.1913From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
27.5408From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
29.55From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
30.6582From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
37.6125From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
WBls:0000083 (80)
WBls:000009288.5492From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
89.2361From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009468.4948From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
78.2212From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:0000097123.747From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
20.5248From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
30.1943From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
47.3136From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
49.2738From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
62.3298From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
WBls:000066288.5545From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
92.283From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:000066366.8711From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[131112 pad] Renamed from Bm7001b as this is a single Isoform locus.Curator_confirmedWBPerson1983
[140501 mh6] Created this isoform based on the RNASeq splice data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated