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WormBase Tree Display for CDS: Bm6080

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Name Class

Bm6080EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (14)
DB_infoDatabaseTrEMBLUniProtAccA0A0H5S3F6
UniProtUniProtAccA0A0H5S3F6
AlphaFoldentryA0A0H5S3F6
Protein_idBm_v4_Chr4_scaffold_001CRZ227351
DB_remarkBMA-UNC-62 protein; contains similarity to Pfam domains PF05920 (Homeobox KN domain), PF16493 (N-terminal of Homeobox Meis and PKNOX1); contains similarity to Interpro domains IPR008422 (Homeobox KN domain), IPR032453 (Homeobox protein PKNOX/Meis, N-terminal), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byexonerate
Prediction_statusConfirmed
VisibleGeneWBGene00226341
Corresponding_transcriptBm6080.1
Corresponding_proteinBM44315
Matching_cDNAbrugia_GG3108|c1_g1_i1Inferred_automaticallytranscript_builder.pl
brugia_GG3449|c0_g1_i1Inferred_automaticallytranscript_builder.pl
brugia_GG3449|c0_g1_i4Inferred_automaticallytranscript_builder.pl
brugia_GG3449|c0_g1_i3Inferred_automaticallytranscript_builder.pl
AA598377Inferred_automaticallytranscript_builder.pl
brugia_GG3108|c1_g1_i3Inferred_automaticallytranscript_builder.pl
brugia_GG3449|c0_g1_i2Inferred_automaticallytranscript_builder.pl
AA675749Inferred_automaticallytranscript_builder.pl
AW874824Inferred_automaticallytranscript_builder.pl
Brief_identificationconserved hypothetical proteinAccession_evidenceTIGRBm1_53090
RNASeq_FPKMWBls:000007828.3497From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
28.7566From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
38.1482From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
42.5318From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
43.1506From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
44.9719From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
46.7597From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
WBls:000008021.3316From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
23.6969From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
24.4549From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
28.071From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
WBls:0000081 (23)
WBls:0000082100.658From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
21.4613From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
25.0098From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
96.6574From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
98.1149From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
WBls:0000083 (80)
WBls:000009232.5936From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
36.66From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:0000094137.117From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
146.491From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:000009711.3644From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
11.7275From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
11.8697From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
44.7834From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
45.4556From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
6.23525From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
WBls:000066268.9078From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
70.9993From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066351.6079From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[121009 mh6] disrupted by multiple gaps in the assemblyCurator_confirmedWBPerson4055
[131112 pad] Renamed from Bm6080d as this is a single Isoform locus.Curator_confirmedWBPerson1983
Methodcurated