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WormBase Tree Display for CDS: Bm5575

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Name Class

Bm5575EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons121
240343
9001083
12601416
16531738
20312231
25072646
27942963
31713317
36393853
DB_infoDatabaseTrEMBLUniProtAccA0A0K0JJG1
UniProtUniProtAccA0A0K0JJG1
AlphaFoldentryA0A0K0JJG1
UniProt_GCRPUniProtAccA0A0K0JJG1
Protein_idBm_v4_Chr4_scaffold_001CRZ231701
DB_remarkcontains similarity to Pfam domains PF00614 (Phospholipase D Active site motif), PF13918 (PLD-like domain); contains similarity to Interpro domains IPR032803 (PLD-like domain), IPR001736 (Phospholipase D/Transphosphatidylase)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
VisibleGeneWBGene00225836
Corresponding_transcriptBm5575.1
Corresponding_proteinBM34401
Matching_cDNAIsoSeq_brugia_PB_4207_1Inferred_automaticallytranscript_builder.pl
brugia_GG1002|c0_g1_i2Inferred_automaticallytranscript_builder.pl
brugia_GG1002|c0_g1_i1Inferred_automaticallytranscript_builder.pl
Brief_identificationPhospholipase D. Active site motif family proteinAccession_evidenceTIGRBm1_53890
RNASeq_FPKMWBls:000007815.2494From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
17.5056From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
17.9136From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
20.3746From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
23.7346From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
27.0463From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
27.3149From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
WBls:000008024.4382From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
25.7109From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
33.0636From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
35.4246From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
WBls:0000081 (23)
WBls:000008234.0317From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
34.7863From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
37.3724From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
38.8166From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
38.9342From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
WBls:0000083 (80)
WBls:000009225.093From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
27.1267From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009419.468From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
21.3936From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:000009724.3261From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
27.705From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
28.0433From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
30.2285From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
39.9909From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
62.0641From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:000066230.8171From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
31.7675From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066316.8384From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[131112 pad] Renamed from Bm5575c as this is a single Isoform locus.Curator_confirmedWBPerson1983
Methodcurated