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WormBase Tree Display for CDS: Bm5397

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Name Class

Bm5397SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (68)
DB_infoDatabaseTrEMBLUniProtAccA0A0I9N5Z2
UniProtUniProtAccA0A0I9N5Z2
AlphaFoldentryA0A0I9N5Z2
Protein_idBm_v4_Chr4_scaffold_001CTP814641
DB_remarkBMA-SMA-1 protein; contains similarity to Pfam domains PF00018 (SH3 domain), PF00169 (PH domain), PF00307 (Calponin homology (CH) domain), PF00435 (Spectrin repeat); contains similarity to Interpro domains IPR002017 (Spectrin repeat), IPR036872 (CH domain superfamily), IPR001849 (Pleckstrin homology domain), IPR001452 (SH3 domain), IPR001605 (Pleckstrin homology domain, spectrin-type), IPR018159 (Spectrin/alpha-actinin), IPR011993 (PH-like domain superfamily), IPR036028 (SH3-like domain superfamily), IPR001715 (Calponin homology domain)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byaugustus
Prediction_statusPartially_confirmed
VisibleGeneWBGene00225658
Corresponding_transcriptBm5397.1
Corresponding_proteinBM40845
Matching_cDNAbrugia_GG5911|c5_g2_i1Inferred_automaticallytranscript_builder.pl
AA842241Inferred_automaticallytranscript_builder.pl
brugia_GG5911|c5_g1_i2Inferred_automaticallytranscript_builder.pl
brugia_GG5911|c5_g2_i2Inferred_automaticallytranscript_builder.pl
AI082990Inferred_automaticallytranscript_builder.pl
brugia_GG5911|c2_g1_i4Inferred_automaticallytranscript_builder.pl
AA111788Inferred_automaticallytranscript_builder.pl
Brief_identificationprobable spectrin beta chain, putativeAccession_evidenceTIGRBm1_22625
RNASeq_FPKMWBls:000007818.3548From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
20.0758From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
23.4366From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
24.0753From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
34.2379From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
71.8543From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
75.5482From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
WBls:000008033.4763From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
35.8202From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
38.6958From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
39.3186From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
WBls:0000081 (23)
WBls:000008244.3263From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
55.5994From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
65.2666From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
66.5806From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
68.7138From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
WBls:0000083 (80)
WBls:000009279.243From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
80.0363From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:0000094100.26From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
93.2789From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:000009719.9439From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
21.7164From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
23.0104From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
30.5605From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
50.7126From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
55.153From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
WBls:000066220.4065From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
22.3886From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:000066327.3791From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Methodcurated