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WormBase Tree Display for CDS: Bm4620a

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Name Class

Bm4620aEvidenceCurator_confirmedWBPerson1983
WBPerson4055
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons1120
30823240
34463587
40034094
42324345
46024722
50155076
52535447
57985930
61446151
DB_infoDatabaseTrEMBLUniProtAccA0A1I9G3J7
UniProtUniProtAccA0A1I9G3J7
AlphaFoldentryA0A1I9G3J7
Protein_idBm_v4_Chr4_scaffold_001CDP983501
DB_remarkBMA-GLF-1 protein; contains similarity to Pfam domain PF01593 (Flavin containing amine oxidoreductase); contains similarity to Interpro domains IPR036188 (FAD/NAD(P)-binding domain superfamily), IPR002937 (Amine oxidase)
OriginFrom_laboratoryELG
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byaugustus
Prediction_statusPartially_confirmed
IsoformCurator_confirmedWBPerson4055
VisibleGeneWBGene00224881
Corresponding_transcriptBm4620a.1
Corresponding_proteinBM46370
Matching_cDNAbrugia_GG5201|c1_g1_i1Inferred_automaticallytranscript_builder.pl
brugia_GG5201|c9_g1_i1Inferred_automaticallytranscript_builder.pl
Brief_identificationamine oxidase, flavin-containing, putativeAccession_evidenceTIGRBm1_34455
RNASeq_FPKMWBls:00000780From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
WBls:00000800From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
RNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
RNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
RNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:00000810.051248From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000081.Unknown.WBbt:0007833.SRP068692.SRX1539758
0.109844From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000081.Unknown.WBbt:0007833.SRP068692.SRX1539799
0.11795From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000081.Unknown.WBbt:0007833.SRP068692.SRX1539813
0.18045From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000081.Unknown.WBbt:0007833.SRP068692.SRX2409230
0From_analysis (19)
WBls:00000820From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
RNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
WBls:0000083 (42)
WBls:00000920.000505From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
0.314636From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:00000940From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
1.97246From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:00000970From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
WBls:00006620From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
RNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:00006630.631268From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Last_reviewed02 Jul 2018 15:02:41WBPerson4055
Remark[160414 mh6] merged with the downstream gene based on comparaCurator_confirmedWBPerson4055
[180702 mh6] This CDS has been updated based on the RNAseq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated