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WormBase Tree Display for CDS: Bm3570

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Name Class

Bm3570EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons160
491697
9311132
16291879
22212346
27852926
32693468
DB_infoDatabaseTrEMBLUniProtAccA0A1U7F423
UniProtUniProtAccA0A1U7F423
AlphaFoldentryA0A1U7F423
UniProt_GCRPUniProtAccA0A1U7F423
Protein_idBm_v4_Chr4_scaffold_001CRZ251311
DB_remarkBMA-PPM-1.A protein; contains similarity to Pfam domains PF00481 (Protein phosphatase 2C), PF07830 (Protein serine/threonine phosphatase 2C, C-terminal domain); contains similarity to Interpro domains IPR036457 (PPM-type phosphatase-like domain superfamily), IPR001932 (PPM-type phosphatase-like domain), IPR012911 (Protein serine/threonine phosphatase 2C, C-terminal), IPR036580 (Phosphatase 2C, C-terminal domain superfamily)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
VisibleGeneWBGene00223831
Corresponding_transcriptBm3570.1
Bm3570.2
Bm3570.3
Bm3570.4
Bm3570.5
Bm3570.6
Corresponding_proteinBM38939
Matching_cDNAIsoSeq_brugia_PB_4956_5Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4956_1Inferred_automaticallytranscript_builder.pl
brugia_GG5200|c8_g1_i1Inferred_automaticallytranscript_builder.pl
brugia_GG5200|c8_g1_i2Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4956_2Inferred_automaticallytranscript_builder.pl
brugia_GG5200|c8_g1_i3Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4956_3Inferred_automaticallytranscript_builder.pl
AA791309Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4956_4Inferred_automaticallytranscript_builder.pl
Brief_identificationProtein phosphatase 2C containing proteinAccession_evidenceTIGRBm1_34490
RNASeq_FPKMWBls:000007819.4212From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
19.4946From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
31.2194From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
35.6698From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
36.4873From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
38.385From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
45.7017From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
WBls:000008045.534From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
50.7037From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
58.8812From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
60.7104From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (23)
WBls:000008235.7244From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
37.679From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
40.9146From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
43.8085From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
50.597From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (80)
WBls:000009282.1512From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
83.0805From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009456.9259From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
58.5784From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:0000097109.906From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
34.2822From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
62.4588From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
65.2657From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
65.5159From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
76.333From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
WBls:000066274.408From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
76.6603From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066340.3214From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[131112 pad] Renamed from Bm3570c as this is a single Isoform locus.Curator_confirmedWBPerson1983
[140709 mh6] Created this isoform based on the RNASeq splice data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated