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WormBase Tree Display for CDS: Bm2818d

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Name Class

Bm2818dEvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (22)
DB_infoDatabaseTrEMBLUniProtAccA0A1I9G3N1
UniProtUniProtAccA0A1I9G3N1
AlphaFoldentryA0A1I9G3N1
Protein_idBm_v4_Chr4_scaffold_001CDP985551
DB_remarkBMA-UBA-1 protein; contains similarity to Pfam domains PF00899 (ThiF family), PF09358 (Ubiquitin fold domain), PF10585 (Ubiquitin-activating enzyme, SCCH domain), PF16190 (Ubiquitin-activating enzyme E1 FCCH domain), PF16191 (Ubiquitin-activating enzyme E1 four-helix bundle); contains similarity to Interpro domains IPR018965 (Ubiquitin-activating enzyme E1, C-terminal), IPR042449 (Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1), IPR032418 (Ubiquitin-activating enzyme E1, FCCH domain), IPR038252 (Ubiquitin-activating enzyme E1, C-terminal domain superfamily), IPR000594 (THIF-type NAD/FAD binding fold), IPR035985 (Ubiquitin-activating enzyme), IPR042302 (Ubiquitin-activating enzyme E1, FCCH domain superfamily), IPR018075 (Ubiquitin-activating enzyme E1), IPR045886 (ThiF/MoeB/HesA family), IPR019572 (Ubiquitin-activating enzyme, SCCH domain), IPR042063 (Ubiquitin-activating enzyme E1, SCCH domain), IPR032420 (Ubiquitin-activating enzyme E1, four-helix bundle), IPR000011 (Ubiquitin/SUMO-activating enzyme E1-like)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
Prediction_statusConfirmed
IsoformCurator_confirmedWBPerson4055
VisibleGeneWBGene00223079
Corresponding_transcriptBm2818d.1
Corresponding_proteinBM49052
Matching_cDNAbrugia_GG5259|c28_g1_i11Inferred_automaticallytranscript_builder.pl
brugia_GG5259|c28_g1_i5Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:000007823.1753From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
26.7294From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
43.0558From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
44.6005From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
51.094From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
54.1781From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
59.9698From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
WBls:000008052.1021From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
53.5846From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
79.3448From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
87.6932From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
WBls:0000081 (23)
WBls:000008256.1963From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
58.6942From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
62.1113From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
68.6966From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
73.5311From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
WBls:0000083 (80)
WBls:0000092101.036From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
97.9372From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:0000094101.32From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
102.454From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:0000097138.685From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
40.3646From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
45.3421From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
50.5768From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
67.3683From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
93.975From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
WBls:0000662112.661From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
91.8097From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066339.0418From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Last_reviewed19 Jul 2019 11:35:28WBPerson4055
Remark[190719 mh6] This structure has been created based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated