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WormBase Tree Display for CDS: Bm2818b

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Name Class

Bm2818bEvidenceCurator_confirmedWBPerson4055
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (23)
DB_infoDatabaseTrEMBLUniProtAccA0A1I9G3Q7
UniProtUniProtAccA0A1I9G3Q7
AlphaFoldentryA0A1I9G3Q7
Protein_idBm_v4_Chr4_scaffold_001CDP985521
DB_remarkBMA-UBA-1 protein; contains similarity to Pfam domains PF00899 (ThiF family), PF09358 (Ubiquitin fold domain), PF10585 (Ubiquitin-activating enzyme, SCCH domain), PF16190 (Ubiquitin-activating enzyme E1 FCCH domain), PF16191 (Ubiquitin-activating enzyme E1 four-helix bundle); contains similarity to Interpro domains IPR018965 (Ubiquitin-activating enzyme E1, C-terminal), IPR042449 (Ubiquitin-activating enzyme E1, inactive adenylation domain, subdomain 1), IPR032418 (Ubiquitin-activating enzyme E1, FCCH domain), IPR038252 (Ubiquitin-activating enzyme E1, C-terminal domain superfamily), IPR000594 (THIF-type NAD/FAD binding fold), IPR035985 (Ubiquitin-activating enzyme), IPR042302 (Ubiquitin-activating enzyme E1, FCCH domain superfamily), IPR018075 (Ubiquitin-activating enzyme E1), IPR045886 (ThiF/MoeB/HesA family), IPR019572 (Ubiquitin-activating enzyme, SCCH domain), IPR042063 (Ubiquitin-activating enzyme E1, SCCH domain), IPR032420 (Ubiquitin-activating enzyme E1, four-helix bundle), IPR000011 (Ubiquitin/SUMO-activating enzyme E1-like)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
Prediction_statusPartially_confirmed
IsoformCurator_confirmedWBPerson4055
VisibleGeneWBGene00223079
Corresponding_transcriptBm2818b.1
Corresponding_proteinBM45953
RNASeq_FPKMWBls:00000780.000349From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
0.000848From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
0.022264From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
0.944366From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
1.60756From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
6.41605From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
7.75283From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
WBls:00000800.000145From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
0.000482From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
0.000756From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
0.00142From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
WBls:0000081 (23)
WBls:00000820.005319From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
0.828548From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
67.0634From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
77.0005From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
86.9248From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
WBls:0000083 (78)
WBls:00000920.001225From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
0.00564From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009455.1161From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
95.8099From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:00000970.000685From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
0.001623From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
0.006638From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
0.013176From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
0.024177From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
0.042319From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
WBls:00006620.125824From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
17.4343From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066320.1755From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Last_reviewed21 Jun 2018 10:57:21WBPerson4055
Remark[180621 mh6] This structure has been created based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated