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WormBase Tree Display for CDS: Bm1768b

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Name Class

Bm1768bSMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (28)
DB_infoDB_remarkcontains similarity to Pfam domains PF00387 (Phosphatidylinositol-specific phospholipase C, Y domain), PF00388 (Phosphatidylinositol-specific phospholipase C, X domain), PF06631 (Protein of unknown function (DUF1154)), PF09279 (Phosphoinositide-specific phospholipase C, efhand-like), PF17787 (PH domain); contains similarity to Interpro domains IPR015359 (Phosphoinositide-specific phospholipase C, EF-hand-like domain), IPR000909 (Phosphatidylinositol-specific phospholipase C, X domain), IPR011992 (EF-hand domain pair), IPR001192 (Phosphoinositide phospholipase C family), IPR001711 (Phospholipase C, phosphatidylinositol-specific, Y domain), IPR042531 (Phospholipase C-beta, C-terminal domain superfamily), IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily), IPR037862 (PLC-beta, PH domain), IPR016280 (Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase beta), IPR009535 (Phospholipase C-beta, conserved site), IPR035892 (C2 domain superfamily), IPR000008 (C2 domain)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byaugustus
Prediction_statusConfirmed
IsoformInferred_automaticallyxace
VisibleGeneWBGene00222029
Corresponding_transcriptBm1768b.1
Corresponding_proteinBM25163
Matching_cDNAbrugia_GG6320|c26_g1_i7Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4729_1Inferred_automaticallytranscript_builder.pl
RNASeq_FPKMWBls:000007820.5692From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
22.532From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
30.9504From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
31.5082From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
31.6007From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
34.0458From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
37.4652From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
WBls:000008028.9167From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
41.7017From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
43.0449From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
48.008From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (23)
WBls:000008243.6354From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
44.7313From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
47.0788From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
49.6038From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
59.6038From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
WBls:0000083 (80)
WBls:000009229.8269From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
37.5006From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009411.7859From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
5.73984From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:00000970.000533From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
0.491783From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
14.1429From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
19.7275From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
24.7672From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
63.3216From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:000066226.254From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
63.7284From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:00006633.97899From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Methodcurated