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WormBase Tree Display for CDS: Bm14044a

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Name Class

Bm14044aEvidenceCurator_confirmedWBPerson615
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons172
458598
9261087
12791379
17421928
DB_infoDatabaseTrEMBLUniProtAccA0A0J9Y9H7
UniProtUniProtAccA0A0J9Y9H7
AlphaFoldentryA0A0J9Y9H7
UniProt_GCRPUniProtAccA0A0J9Y9H7
Protein_idBm_v4_Chr4_scaffold_001CDQ051281
DB_remarkBMA-RPC-25 protein; contains similarity to Pfam domains PF03876 (SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397), PF08292 (RNA polymerase III subunit Rpc25); contains similarity to Interpro domains IPR005576 (RNA polymerase Rpb7-like , N-terminal), IPR013238 (RNA polymerase III, subunit Rpc25), IPR036898 (RNA polymerase Rpb7-like, N-terminal domain superfamily), IPR012340 (Nucleic acid-binding, OB-fold), IPR045113 (RNA polymerase subunit Rpb7-like)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
IsoformInferred_automaticallyxace
VisibleGeneWBGene00234305
Corresponding_transcriptBm14044a.1
Corresponding_proteinBM04631
Matching_cDNAAI053125Inferred_automaticallytranscript_builder.pl
brugia_GG529|c1_g2_i1Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4415_1Inferred_automaticallytranscript_builder.pl
brugia_GG529|c1_g3_i1Inferred_automaticallytranscript_builder.pl
Brief_identificationRNA polymerase Rpb7, N-terminal domain containing proteinAccession_evidenceTIGRBm1_54365
RNASeq_FPKMWBls:000007813.8472From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
13.9194From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
15.1015From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
15.8948From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
17.3237From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
19.3916From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
20.2061From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
WBls:000008033.6086From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
34.244From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
63.7664From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
67.7433From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
WBls:0000081 (23)
WBls:000008210.7105From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
20.4037From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
24.93From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
6.45498From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
9.81967From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
WBls:0000083 (80)
WBls:000009222.8956From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
25.1585From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009410.2311From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
11.0698From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:000009717.53From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
22.0899From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
35.9212From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
44.3423From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
57.0653From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
65.2946From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
WBls:00006624.58892From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
4.89489From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:00006638.11005From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[20120103 js] renamed Bm14044a from Bm14044a when Bm14044b was createdCurator_confirmedWBPerson615
Methodcurated