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WormBase Tree Display for CDS: Bm13956a

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Name Class

Bm13956aEvidenceCurator_confirmedWBPerson615
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons1164
333447
695870
9551196
14241577
17161899
22692483
26612892
DB_infoDatabaseTrEMBLUniProtAccA0A0K0IZP0
UniProtUniProtAccA0A0K0IZP0
AlphaFoldentryA0A0K0IZP0
UniProt_GCRPUniProtAccA0A0K0IZP0
Protein_idBm_v4_Chr4_scaffold_001CDP989831
DB_remarkBMA-PRP-31 protein; contains similarity to Pfam domains PF01798 (snoRNA binding domain, fibrillarin), PF09785 (Prp31 C terminal domain); contains similarity to Interpro domains IPR027105 (U4/U6 small nuclear ribonucleoprotein Prp31), IPR042239 (Nop, C-terminal domain), IPR036070 (Nop domain superfamily), IPR002687 (Nop domain), IPR012976 (NOSIC), IPR019175 (Prp31 C-terminal)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
IsoformInferred_automaticallyxace
VisibleGeneWBGene00234217
Corresponding_transcriptBm13956a.1
Corresponding_proteinBM31375
Matching_cDNAIsoSeq_brugia_PB_4983_1Inferred_automaticallytranscript_builder.pl
brugia_GG5644|c18_g1_i1Inferred_automaticallytranscript_builder.pl
brugia_GG5644|c18_g1_i2Inferred_automaticallytranscript_builder.pl
Brief_identificationSnoRNA binding domain containing proteinAccession_evidenceTIGRBm1_29095
RNASeq_FPKMWBls:000007811.7755From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
15.4094From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
19.6841From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
31.3296From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
32.1653From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
32.6559From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
9.53514From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
WBls:000008046.5921From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
48.4008From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
49.8048From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
67.1553From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
WBls:0000081 (23)
WBls:000008215.5783From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
18.8603From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
19.9717From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
25.951From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
28.0081From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (80)
WBls:000009247.3133From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
48.6472From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
WBls:000009412.9025From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
14.2145From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:0000097114.958From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
18.6008From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
48.3761From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
50.755From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
52.3985From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
53.469From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
WBls:000066227.1084From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
43.3779From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066343.6206From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[20120807 js] this gene is based on RNASeq data and BLASTX alignmentsProtein_id_evidenceWP:CE24126
Methodcurated