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WormBase Tree Display for CDS: Bm13763

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Name Class

Bm13763EvidenceCurator_confirmedWBPerson615
SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons1170
475664
785909
10951245
15491697
17801967
23002373
25102618
27962965
34743653
DB_infoDatabaseTrEMBLUniProtAccA0A0K0IYX1
UniProtUniProtAccA0A0K0IYX1
AlphaFoldentryA0A0K0IYX1
UniProt_GCRPUniProtAccA0A0K0IYX1
Protein_idBm_v4_Chr4_scaffold_001CDP984531
DB_remarkcontains similarity to Pfam domains PF00448 (SRP54-type protein, GTPase domain), PF02881 (SRP54-type protein, helical bundle domain), PF02978 (Signal peptide binding domain); contains similarity to Interpro domains IPR004125 (Signal recognition particle, SRP54 subunit, M-domain), IPR036225 (SRP/SRP receptor, N-terminal), IPR000897 (Signal recognition particle, SRP54 subunit, GTPase domain), IPR036891 (Signal recognition particle, SRP54 subunit, M-domain superfamily), IPR013822 (Signal recognition particle SRP54, helical bundle), IPR042101 (Signal recognition particle SRP54, N-terminal domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR006325 (Signal recognition particle, SRP54 subunit, eukaryotic), IPR003593 (AAA+ ATPase domain), IPR022941 (Signal recognition particle, SRP54 subunit)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byRATT
Prediction_statusConfirmed
VisibleGeneWBGene00234024
Corresponding_transcriptBm13763.1
Corresponding_proteinBM01889
Matching_cDNAbrugia_GG5202|c7_g1_i2Inferred_automaticallytranscript_builder.pl
AA253526Inferred_automaticallytranscript_builder.pl
brugia_GG5202|c7_g1_i1Inferred_automaticallytranscript_builder.pl
Brief_identificationsignal recognition particle 54 kDa protein (SRP54), putativeAccession_evidenceTIGRBm1_17780
RNASeq_FPKMWBls:000007833.7594From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
34.3185From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
40.7314From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
40.774From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
54.6384From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
55.1915From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
56.4217From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
WBls:000008056.6567From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
61.777From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
76.0131From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
77.1597From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
WBls:0000081 (23)
WBls:000008244.3578From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
47.8314From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
48.9635From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
60.3187From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
67.7894From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (80)
WBls:000009264.7328From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
65.7875From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009449.2073From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
58.486From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:000009721.4066From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
40.9783From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
45.1461From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
55.8877From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
60.9608From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
62.6496From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
WBls:0000662107.979From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
87.8377From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:0000663112.276From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Remark[20121127 js] this gene is based on RNASeq data and BLASTX alignmentsProtein_id_evidenceWP:CE09524
Methodcurated