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WormBase Tree Display for CDS: Bm12639

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Name Class

Bm12639SMapS_parentSequenceBm_v4_Chr4_scaffold_001
StructureSource_exons (31)
DB_infoDatabaseTrEMBLUniProtAccA0A0J9YG78
UniProtUniProtAccA0A0J9YG78
AlphaFoldentryA0A0J9YG78
Protein_idBm_v4_Chr4_scaffold_001CDQ082991
DB_remarkBMA-ARID-1 protein; contains similarity to Pfam domains PF01388 (ARID/BRIGHT DNA binding domain), PF08169 (RBB1NT (NUC162) domain); contains similarity to Interpro domains IPR016197 (Chromo-like domain superfamily), IPR036431 (ARID DNA-binding domain superfamily), IPR012603 (ARID4A/B, PWWP domain), IPR001606 (ARID DNA-binding domain)
OriginFrom_laboratoryHX
SpeciesBrugia malayi
PropertiesCodingCDS
CDS_predicted_byaugustus
Prediction_statusConfirmed
VisibleGeneWBGene00232900
Corresponding_transcriptBm12639.1
Corresponding_proteinBM33699
Matching_cDNAbrugia_GG3038|c15_g2_i3Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4310_26Inferred_automaticallytranscript_builder.pl
brugia_GG3038|c15_g2_i1Inferred_automaticallytranscript_builder.pl
brugia_GG3038|c15_g2_i4Inferred_automaticallytranscript_builder.pl
brugia_GG3038|c15_g1_i3Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4310_16Inferred_automaticallytranscript_builder.pl
IsoSeq_brugia_PB_4310_8Inferred_automaticallytranscript_builder.pl
Brief_identificationARID/BRIGHT DNA binding domain containing proteinAccession_evidenceTIGRBm1_55865
RNASeq_FPKMWBls:000007810.3676From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
24.2494From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
24.7113From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
25.2464From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
25.2875From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
41.1969From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
9.85668From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
WBls:000008020.7186From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
21.2591From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
22.8514From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
25.025From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
WBls:0000081 (23)
WBls:000008233.6273From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
33.7256From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
35.4145From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
39.7341From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
42.1541From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
WBls:0000083 (80)
WBls:0000092105.535From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
109.459From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009487.2664From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
87.8927From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:000009718.174From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
26.8311From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
27.6563From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
31.5257From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
37.3521From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
39.4451From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
WBls:000066264.6813From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
68.384From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:000066346.9126From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Methodcurated