WormBase Tree Display for CDS: Y92H12A.1a
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Y92H12A.1a | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y92H12A | |||
Structure | Source_exons | 1 | 77 | |||
2741 | 3073 | |||||
4325 | 4476 | |||||
6535 | 6883 | |||||
9779 | 10260 | |||||
11464 | 11672 | |||||
DB_info | Database | KEGG | KEGG_id | 2.7.10.2 | ||
SwissProt | UniProtAcc | G5EE56 | ||||
UniProtIsoformAcc | G5EE56-1 | |||||
UniProt | UniProtAcc | G5EE56 | ||||
UniProt_GCRP | UniProtAcc | G5EE56 | ||||
AlphaFold | entry | G5EE56 | ||||
NCBI_protein | GI_number | GI:351063306 | ||||
Protein_id | CHROMOSOME_I | CCD71465 | 1 | |||
DB_remark | SRC-1 protein; contains similarity to Pfam domains PF00017 (SH2 domain), PF00018 (SH3 domain), PF07714 (Protein tyrosine and serine/threonine kinase); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR036860 (SH2 domain superfamily), IPR036028 (SH3-like domain superfamily), IPR001245 (Serine-threonine/tyrosine-protein kinase, catalytic domain), IPR001452 (SH3 domain), IPR000980 (SH2 domain), IPR020635 (Tyrosine-protein kinase, catalytic domain) | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson1983 | ||||
Feature_evidence | WBsf947300 | |||||
Visible | Gene | WBGene00005077 | ||||
Corresponding_transcript | Y92H12A.1a.1 | |||||
Corresponding_protein | CE39993 | |||||
Corresponding_PCR_product | cenix:154-c4 | |||||
Corresponding_oligo_set (12) | ||||||
Matching_cDNA (21) | ||||||
RNAi_result (88) | ||||||
Microarray_results (13) | ||||||
Brief_identification | Tyrosine protein-kinase src-1 | Accession_evidence | UniProt | SP:G5EE56 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 29 Jan 2014 00:00:00 | WBPerson1983 | ||||
Remark | yk117f2.5 indicates new first exon and 1 confirmed intron in 5'UTR 01-04-19 rew | |||||
[020627 tb] modified introns 3&4 based on AF475094. | Curator_confirmed | WBPerson1849 | ||||
[20060216 po] removed a 3' exon based on mRNA data(AF419171) | Curator_confirmed | WBPerson1867 | ||||
WBPerson1849 | ||||||
Method | curated |