WormBase Tree Display for CDS: Y54E10A.4a
expand all nodes | collapse all nodes | view schema
| Y54E10A.4a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y54E10A | |||
| Structure | Source_exons | 1 | 85 | |||
| 682 | 827 | |||||
| 892 | 1194 | |||||
| 2196 | 2645 | |||||
| 3671 | 3904 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q95XX9 | ||
| UniProt | UniProtAcc | Q95XX9 | ||||
| AlphaFold | entry | Q95XX9 | ||||
| NCBI_protein | GI_number | GI:373220247 | ||||
| Protein_id | CHROMOSOME_I | CCD72821 | 1 | |||
| DB_remark | FOG-1 protein; contains similarity to Pfam domains PF00076 (RNA recognition motif), PF16367 (RNA recognition motif); contains similarity to Interpro domains IPR034819 (Cytoplasmic polyadenylation element-binding protein), IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR038446 (CEBP, ZZ domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding (2) | |||||
| Isoform | Accession_evidence | EMBL | CEL297846 | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00001481 | ||||
| Corresponding_transcript | Y54E10A.4a.1 | |||||
| Y54E10A.4a.2 | ||||||
| Corresponding_protein | CE27479 | |||||
| Corresponding_PCR_product | WBPaper00004527:Y54E10A_1.1 | |||||
| cenix:229-a12 | ||||||
| mv_Y54E10A.4 | ||||||
| sjj_Y54E10A_156.d | ||||||
| Corresponding_oligo_set (12) | ||||||
| Matching_cDNA (32) | ||||||
| RNAi_result (14) | ||||||
| Microarray_results (13) | ||||||
| Brief_identification | RRM domain-containing protein | Accession_evidence | UniProt | TR:Q95XX9 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 07 Oct 2014 00:00:00 | WBPerson1983 | ||||
| Remark | [010419 db] created this alternatively spliced form based on mRNA data | Curator_confirmed | WBPerson1848 | |||
| SL1 trans-spliced; see AJ297848 | ||||||
| Associated_feature | WBsf000176 | |||||
| WBsf000178 | ||||||
| Method | curated |
