WormBase Tree Display for CDS: W06B3.2c
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| W06B3.2c | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_X | |||
| Structure | Source_exons | 1 | 27 | |||
| 3618 | 3801 | |||||
| 4373 | 4551 | |||||
| 4605 | 4764 | |||||
| 4925 | 5034 | |||||
| 5585 | 6049 | |||||
| 6098 | 6253 | |||||
| 6388 | 6505 | |||||
| 6914 | 7044 | |||||
| DB_info | Database | KEGG | KEGG_id | 2.7.11.24 | ||
| SwissProt | UniProtAcc | G5EBT1 | ||||
| UniProtIsoformAcc | G5EBT1-1 | |||||
| UniProt | UniProtAcc | G5EBT1 | ||||
| UniProt_GCRP | UniProtAcc | G5EBT1 | ||||
| AlphaFold | entry | G5EBT1 | ||||
| NCBI_protein | GI_number | GI:83764123 | ||||
| TREEFAM | TREEFAM_ID | TF354210 | ||||
| Protein_id | CHROMOSOME_X | CAJ55250 | 1 | |||
| DB_remark | SMA-5 protein; contains similarity to Pfam domain PF00069 (Protein kinase domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR000719 (Protein kinase domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | NDB | BJ759372 | |||
| Visible | Gene | WBGene00004859 | ||||
| Corresponding_transcript | W06B3.2c.1 | |||||
| Corresponding_protein | CE39526 | |||||
| Corresponding_PCR_product | cenix:62-g12 | |||||
| mv_W06B3.2 | ||||||
| smd_W06B3.2 | ||||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA | L1_Nanopore_Roach_69421 | |||||
| L3_Nanopore_Roach_13203 | ||||||
| male_Nanopore_Roach_9153 | ||||||
| L4_Nanopore_Roach_7503 | ||||||
| L4_Nanopore_Roach_7236 | ||||||
| L4_Nanopore_Roach_42128 | ||||||
| L2_Nanopore_Roach_47204 | ||||||
| male_Nanopore_Roach_9033 | ||||||
| L4_Nanopore_Roach_30150 | ||||||
| RNAi_result | WBRNAi00061290 | |||||
| WBRNAi00054867 | ||||||
| WBRNAi00087939 | ||||||
| WBRNAi00112954 | ||||||
| WBRNAi00113184 | ||||||
| Microarray_results (27) | ||||||
| Brief_identification | Mitogen-activated protein kinase sma-5 | Accession_evidence | UniProt | SP:G5EBT1 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 02 Dec 2005 00:00:00 | WBPerson1983 | ||||
| Remark | [051202 pad] Gene prediction created as the long confirmed intron at the 5' end can be incorporated into a valid CDS, this may represent the .2c isoform detailed in the paper. | Accession_evidence | NDB | BJ759372 | ||
| Curator_confirmed | WBPerson1983 | |||||
| Method | curated |
