WormBase Tree Display for CDS: T21C12.1j
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| T21C12.1j | Evidence | Curator_confirmed | WBPerson1983 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T21C12 | |||
| Structure | Source_exons | 1 | 74 | |||
| 1080 | 1166 | |||||
| 1755 | 1830 | |||||
| 1949 | 2190 | |||||
| 3276 | 3358 | |||||
| 4306 | 4307 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | U4PBB4 | ||
| UniProt | UniProtAcc | U4PBB4 | ||||
| AlphaFold | entry | U4PBB4 | ||||
| NCBI_protein | GI_number | GI:548948853 | ||||
| Protein_id | CHROMOSOME_III | CDH93142 | 1 | |||
| DB_remark | UNC-49 protein; contains similarity to Pfam domain PF02931 (Neurotransmitter-gated ion-channel ligand binding domain); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR006201 (Neurotransmitter-gated ion-channel) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Visible | Gene | WBGene00006784 | ||||
| Corresponding_transcript | T21C12.1j.1 | |||||
| Corresponding_protein | CE48604 | |||||
| Corresponding_PCR_product | mv_AAD42382 | |||||
| mv_AAD42383 | ||||||
| mv_AAD42384 | ||||||
| mv_AAD42385 | ||||||
| mv_AAD42386 | ||||||
| Corresponding_oligo_set | GPL19516_CGZ0035850 | |||||
| GPL19516_CGZ0035853 | ||||||
| GPL21109_T21C12.1g | ||||||
| GPL21109_T21C12.1j | ||||||
| GPL3518_CE28086 | ||||||
| GPL8673_T21C12_1cP00031 | ||||||
| GPL8673_T21C12_1cP00463 | ||||||
| Matching_cDNA | L2_Nanopore_Roach_20941 | |||||
| RNAi_result | WBRNAi00027895 | |||||
| WBRNAi00000954 | ||||||
| Microarray_results | GPL19516_CGZ0035850 | |||||
| GPL19516_CGZ0035853 | ||||||
| GPL21109_T21C12.1g | ||||||
| GPL21109_T21C12.1j | ||||||
| GPL3518_CE28086 | ||||||
| GPL8673_T21C12_1cP00031 | ||||||
| GPL8673_T21C12_1cP00463 | ||||||
| GPL8673_T21C12_1dP00031 | ||||||
| GPL8673_T21C12_1dP00463 | ||||||
| Brief_identification | Neurotransmitter-gated ion-channel ligand-binding domain-containing protein | Accession_evidence | UniProt | TR:U4PBB4 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 26 Sep 2013 00:00:00 | WBPerson1983 | ||||
| Remark | [130902 pad] unc-49 contains a single copy of a GABA receptor N terminus, followed by three tandem copies of a GABA receptor C terminus. Using a single promoter, unc-49 generates three distinct GABA-A receptor-like subunits by splicing the N terminus to each of the three C-terminal repeats. This represents an RT-PCR product that was produced where exon 6 is skipped. There is low level RNASeq data to support this. | Paper_evidence | WBPaper00003576 | |||
| Curator_confirmed | WBPerson1983 | |||||
| From_analysis | RNASeq_Hillier_elegans | |||||
| [220323 pad] This gene annotation corresponds to the UNC-49A isoform from Bamber et al. 1999 The Caenorhabditis elegans unc-49 Locus Encodes Multiple Subunits of a Heteromultimeric GABA Receptor. | Paper_evidence | WBPaper00003576 | ||||
| Curator_confirmed | WBPerson1983 | |||||
| Method | curated |
