WormBase Tree Display for CDS: T07F12.4a
expand all nodes | collapse all nodes | view schema
| T07F12.4a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T07F12 | |||
| Structure | Source_exons | 1 | 183 | |||
| 231 | 289 | |||||
| 351 | 503 | |||||
| 712 | 854 | |||||
| 902 | 1071 | |||||
| 1195 | 1404 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A3P6MYF5 | ||
| UniProt | UniProtAcc | A0A3P6MYF5 | ||||
| AlphaFold | entry | A0A3P6MYF5 | ||||
| NCBI_protein | GI_number | GI:1529460793 | ||||
| Protein_id | CHROMOSOME_X | VDJ66219 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF00069 (Protein kinase domain); contains similarity to Interpro domains IPR045269 (Serine/threonine-protein kinase Atg1-like), IPR011009 (Protein kinase-like domain superfamily), IPR000719 (Protein kinase domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Visible | Gene | WBGene00020324 | ||||
| Corresponding_transcript | T07F12.4a.1 | |||||
| T07F12.4a.2 | ||||||
| Corresponding_protein | CE52823 | |||||
| Corresponding_PCR_product | cenix:100-g11 | |||||
| mv_T07F12.4 | ||||||
| sjj_T07F12.4 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (32) | ||||||
| RNAi_result | WBRNAi00035315 | |||||
| WBRNAi00052776 | ||||||
| WBRNAi00018383 | ||||||
| WBRNAi00076660 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Protein kinase domain-containing protein | Accession_evidence | UniProt | TR:A0A3P6MYF5 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 22 Oct 2018 16:19:44 | WBPerson1983 | ||||
| Remark | [010723 db] added new N-terminus based on EST data | Curator_confirmed | WBPerson1848 | |||
| [181022 pad] This CDS has been updated based on the RNAseq data. Extended 5 prime to the 1st available atg. | Curator_confirmed | WBPerson1983 | ||||
| From_analysis | RNASeq | |||||
| Associated_feature | WBsf131555 | |||||
| Method | curated |
