WormBase Tree Display for CDS: T02C5.5n
expand all nodes | collapse all nodes | view schema
| T02C5.5n | SMap | S_parent | Sequence | CHROMOSOME_X | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (32) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A3B1E4Z9 | ||
| UniProt | UniProtAcc | A0A3B1E4Z9 | ||||
| AlphaFold | entry | A0A3B1E4Z9 | ||||
| NCBI_protein | GI_number | GI:1526745402 | ||||
| Protein_id | CHROMOSOME_X | VAY52592 | 1 | |||
| DB_remark | UNC-2 protein; contains similarity to Pfam domains PF00520 (Ion transport protein), PF08763 (Voltage gated calcium channel IQ domain), PF16905 (Voltage-dependent L-type calcium channel, IQ-associated); contains similarity to Interpro domains IPR014873 (Voltage-dependent calcium channel, alpha-1 subunit, IQ domain), IPR031649 (Voltage-dependent L-type calcium channel, IQ-associated domain), IPR005821 (Ion transport domain), IPR027359 (Voltage-dependent channel domain superfamily), IPR002077 (Voltage-dependent calcium channel, alpha-1 subunit) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Visible | Gene | WBGene00006742 | ||||
| Corresponding_transcript | T02C5.5n.1 | |||||
| Corresponding_protein | CE52755 | |||||
| Corresponding_PCR_product | cenix:149-c6 | |||||
| cenix:54-h1 | ||||||
| mv_F25H10.1 | ||||||
| mv_T02C5.4 | ||||||
| mv_T02C5.5 | ||||||
| sjj_F25H10.1 | ||||||
| sjj_T02C5.4 | ||||||
| sjj_T02C5.5 | ||||||
| Corresponding_oligo_set (34) | ||||||
| Matching_cDNA | L1_Nanopore_Roach_82342 | |||||
| L2_Nanopore_Roach_96295 | ||||||
| L1_Nanopore_Roach_13786 | ||||||
| L1_Nanopore_Roach_6973 | ||||||
| L1_Nanopore_Roach_13431 | ||||||
| L1_Nanopore_Roach_6875 | ||||||
| L1_Nanopore_Roach_86119 | ||||||
| RST5_376883 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (18) | ||||||
| Microarray_results (37) | ||||||
| Brief_identification | EF-hand domain-containing protein | Accession_evidence | UniProt | TR:A0A3B1E4Z9 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 20 Jun 2018 14:49:09 | WBPerson1983 | ||||
| Remark | [180620 pad] This structure has been created based on the RNASeq data. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
