WormBase Tree Display for CDS: F56A6.1a
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| F56A6.1a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F56A6 | |||
| Structure | Source_exons | 1 | 151 | |||
| 209 | 462 | |||||
| 507 | 706 | |||||
| 753 | 812 | |||||
| 863 | 981 | |||||
| 1041 | 1483 | |||||
| 1532 | 1818 | |||||
| 1864 | 2260 | |||||
| 2307 | 2962 | |||||
| 3009 | 3105 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A0U1RML5 | ||
| UniProt | UniProtAcc | A0A0U1RML5 | ||||
| UniProt_GCRP | UniProtAcc | A0A0U1RML5 | ||||
| AlphaFold | entry | A0A0U1RML5 | ||||
| NCBI_protein | GI_number | GI:351065919 | ||||
| TREEFAM | TREEFAM_ID | TF316656 | ||||
| Protein_id | CHROMOSOME_I | CCD71915 | 1 | |||
| DB_remark | SAGO-2 protein; contains similarity to Pfam domains PF02170 (PAZ domain), PF02171 (Piwi domain); contains similarity to Interpro domains IPR003100 (PAZ domain), IPR036085 (PAZ domain superfamily), IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR003165 (Piwi domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | BJ811075 | |||
| Visible | Gene | WBGene00018921 | ||||
| Corresponding_transcript | F56A6.1a.1 | |||||
| Corresponding_protein | CE25906 | |||||
| Corresponding_PCR_product | cenix:197-d9 | |||||
| mv_C18E3.7_1 | ||||||
| mv_G_YK4233 | ||||||
| mv_Y65B4A.g | ||||||
| sjj_C18E3.7_1 | ||||||
| sjj_F56A6.1 | ||||||
| sjj_Y48G8A_3671.c | ||||||
| sjj_Y65B4A_178.a | ||||||
| smd_F56A6.1 | ||||||
| smd_Y65B4A_178.a | ||||||
| Corresponding_oligo_set (25) | ||||||
| Matching_cDNA (75) | ||||||
| RNAi_result | WBRNAi00003806 | |||||
| WBRNAi00040943 | ||||||
| WBRNAi00061632 | ||||||
| WBRNAi00037701 | ||||||
| WBRNAi00021245 | ||||||
| WBRNAi00002990 | ||||||
| WBRNAi00095808 | ||||||
| WBRNAi00040942 | ||||||
| Microarray_results (42) | ||||||
| Brief_identification | Piwi domain-containing protein | Accession_evidence | UniProt | TR:A0A0U1RML5 | ||
| RNASeq_FPKM (74) | ||||||
| Remark | this was extended at its 3' end when the neighboring clone was finished - 20000224 -js | |||||
| Method | curated |
