WormBase Tree Display for CDS: F08B1.1e
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F08B1.1e | Evidence | Curator_confirmed | WBPerson1983 | |||
---|---|---|---|---|---|---|
Inferred_automatically | make_isoforms.pl | |||||
SMap | S_parent | Sequence | F08B1 | |||
Structure | Source_exons (8) | |||||
DB_info | Database | TrEMBL | UniProtAcc | A0A2C9C380 | ||
UniProt | UniProtAcc | A0A2C9C380 | ||||
AlphaFold | entry | A0A2C9C380 | ||||
NCBI_protein | GI_number | GI:1249576631 | ||||
Protein_id | CHROMOSOME_II | SOF58745 | 1 | |||
DB_remark | VHP-1 protein; contains similarity to Pfam domains PF00581 (Rhodanese-like domain), PF00782 (Dual specificity phosphatase, catalytic domain); contains similarity to Interpro domains IPR020422 (Dual specificity protein phosphatase domain), IPR036873 (Rhodanese-like domain superfamily), IPR008343 (Mitogen-activated protein (MAP) kinase phosphatase), IPR001763 (Rhodanese-like domain), IPR029021 (Protein-tyrosine phosphatase-like), IPR000340 (Dual specificity phosphatase, catalytic domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson1983 | ||||
Feature_evidence | WBsf015647 | |||||
Visible | Gene | WBGene00006923 | ||||
Corresponding_transcript | F08B1.1e.1 | |||||
Corresponding_protein | CE52364 | |||||
Corresponding_PCR_product | cenix:146-c11 | |||||
mv_F08B1.1 | ||||||
mv_F09E5.f | ||||||
sjj_F08B1.1 | ||||||
Corresponding_oligo_set (26) | ||||||
Matching_cDNA (18) | ||||||
RNAi_result (96) | ||||||
Microarray_results (34) | ||||||
Brief_identification | protein-tyrosine-phosphatase | Accession_evidence | UniProt | TR:A0A2C9C380 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 18 Sep 2017 12:12:53 | WBPerson1983 | ||||
Remark | [170918 pad] Created this extended isoform based on the RNASeq splice data. New exon ~8kb upstream of the original annotation start. | Curator_confirmed | WBPerson1983 | |||
From_analysis | RNASeq_splice | |||||
Sequence_evidence | yk1427f01.5 | |||||
Method | curated |