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WormBase Tree Display for CDS: F08B1.1e

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Name Class

F08B1.1eEvidenceCurator_confirmedWBPerson1983
Inferred_automaticallymake_isoforms.pl
SMapS_parentSequenceF08B1
StructureSource_exons (8)
DB_infoDatabaseTrEMBLUniProtAccA0A2C9C380
UniProtUniProtAccA0A2C9C380
AlphaFoldentryA0A2C9C380
NCBI_proteinGI_numberGI:1249576631
Protein_idCHROMOSOME_IISOF587451
DB_remarkVHP-1 protein; contains similarity to Pfam domains PF00581 (Rhodanese-like domain), PF00782 (Dual specificity phosphatase, catalytic domain); contains similarity to Interpro domains IPR020422 (Dual specificity protein phosphatase domain), IPR036873 (Rhodanese-like domain superfamily), IPR008343 (Mitogen-activated protein (MAP) kinase phosphatase), IPR001763 (Rhodanese-like domain), IPR029021 (Protein-tyrosine phosphatase-like), IPR000340 (Dual specificity phosphatase, catalytic domain)
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
IsoformCurator_confirmedWBPerson1983
Feature_evidenceWBsf015647
VisibleGeneWBGene00006923
Corresponding_transcriptF08B1.1e.1
Corresponding_proteinCE52364
Corresponding_PCR_productcenix:146-c11
mv_F08B1.1
mv_F09E5.f
sjj_F08B1.1
Corresponding_oligo_set (26)
Matching_cDNA (18)
RNAi_result (96)
Microarray_results (34)
Brief_identificationprotein-tyrosine-phosphataseAccession_evidenceUniProtTR:A0A2C9C380
RNASeq_FPKM (74)
Last_reviewed18 Sep 2017 12:12:53WBPerson1983
Remark[170918 pad] Created this extended isoform based on the RNASeq splice data. New exon ~8kb upstream of the original annotation start.Curator_confirmedWBPerson1983
From_analysisRNASeq_splice
Sequence_evidenceyk1427f01.5
Methodcurated