WormBase Tree Display for CDS: C04D8.1a
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| C04D8.1a | SMap | S_parent | Sequence | CHROMOSOME_III | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (19) | |||||
| DB_info | Database | SwissProt | UniProtAcc | P34288 | ||
| UniProtIsoformAcc | P34288-1 | |||||
| UniProt | UniProtAcc | P34288 | ||||
| UniProt_GCRP | UniProtAcc | P34288 | ||||
| AlphaFold | entry | P34288 | ||||
| NCBI_protein | GI_number | GI:373254579 | ||||
| Protein_id | CHROMOSOME_III | CCD62880 | 1 | |||
| DB_remark | PAC-1 protein; contains similarity to Pfam domains PF00169 (PH domain), PF00620 (RhoGAP domain); contains similarity to Interpro domains IPR008936 (Rho GTPase activation protein), IPR001849 (Pleckstrin homology domain), IPR011993 (PH-like domain superfamily), IPR000198 (Rho GTPase-activating protein domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Isoform | Accession_evidence | EMBL | U02289 | |||
| Visible | Gene | WBGene00015418 | ||||
| Corresponding_transcript | C04D8.1a.1 | |||||
| Corresponding_protein | CE43148 | |||||
| Corresponding_PCR_product | TH:303A1 | |||||
| cenix:303-a1 | ||||||
| mv_C04D8.1 | ||||||
| mv_F42H10.9 | ||||||
| sjj_C04D8.1 | ||||||
| sjj_ZC21.8 | ||||||
| smd_9ZC21.8 | ||||||
| Corresponding_oligo_set (23) | ||||||
| Matching_cDNA (52) | ||||||
| RNAi_result | WBRNAi00010104 | |||||
| WBRNAi00039589 | ||||||
| WBRNAi00111060 | ||||||
| WBRNAi00021621 | ||||||
| WBRNAi00005216 | ||||||
| Microarray_results (26) | ||||||
| Brief_identification | GTPase-activating protein pac-1 | Accession_evidence | UniProt | SP:P34288 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 26 Sep 2013 00:00:00 | WBPerson1983 | ||||
| Remark | this structure is based on a cDNA (211) isolated and reported by Chen et al., J. Biol. Chem. 269: 820-823, 1994 | |||||
| note the unusual 5'splice site in second intron that is required by the cDNA | ||||||
| [000718 db] modified N-terminal exon based on data communicated by Andreas Prlic | Curator_confirmed | WBPerson1848 | ||||
| [20021210 tb] removed 5' exon based on the mRNA U02289. This also indicates an intron in the 5' UTR. | Curator_confirmed | WBPerson1849 | ||||
| WBPerson1848 | ||||||
| Method | curated |
