WormBase Tree Display for CDS: PPA39626
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PPA39626 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 171 | |||
686 | 799 | |||||
2391 | 2492 | |||||
2824 | 2895 | |||||
3997 | 4163 | |||||
4885 | 4969 | |||||
8156 | 8310 | |||||
8413 | 8477 | |||||
8521 | 8621 | |||||
8841 | 8896 | |||||
9159 | 9267 | |||||
9838 | 10010 | |||||
10270 | 10378 | |||||
10882 | 10989 | |||||
11066 | 11147 | |||||
11239 | 11307 | |||||
11447 | 11600 | |||||
12015 | 12113 | |||||
12282 | 12441 | |||||
12559 | 12692 | |||||
12958 | 13042 | |||||
13130 | 13234 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S322-2.40 | ||
DB_remark | PPA-ADM-2 protein; contains similarity to Pfam domains PF01421 (Reprolysin (M12B) family zinc metalloprotease), PF08516 (ADAM cysteine-rich); contains similarity to Interpro domains IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR036436 (Disintegrin domain superfamily), IPR006586 (ADAM, cysteine-rich domain), IPR001762 (Disintegrin domain), IPR001590 (Peptidase M12B, ADAM/reprolysin) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00277995 | ||||
Corresponding_transcript | PPA39626.1 | |||||
Corresponding_protein | PP71590 | |||||
Corresponding_oligo_set | GPL14372_Probes_89185 | |||||
GPL14372_Probes_89186 | ||||||
GPL14372_Probes_89187 | ||||||
Matching_cDNA | AW114802 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_89185 | |||||
GPL14372_Probes_89186 | ||||||
GPL14372_Probes_89187 | ||||||
RNASeq_FPKM | WBls:0000032 | 1.41815 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 3.34959 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |