WormBase Tree Display for CDS: F42A8.2
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| F42A8.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F42A8 | |||
| Structure | Source_exons | 1 | 70 | |||
| 718 | 866 | |||||
| 918 | 1151 | |||||
| 1198 | 1326 | |||||
| 1499 | 1723 | |||||
| 1773 | 1862 | |||||
| DB_info | Database | KEGG | KEGG_id | 1.3.5.1 | ||
| SwissProt | UniProtAcc | Q09545 | ||||
| UniProt | UniProtAcc | Q09545 | ||||
| UniProt_GCRP | UniProtAcc | Q09545 | ||||
| AlphaFold | entry | Q09545 | ||||
| NCBI_protein | GI_number | GI:3876930 | ||||
| TREEFAM | TREEFAM_ID | TF300754 | ||||
| Protein_id | CHROMOSOME_II | CAA87780 | 1 | |||
| DB_remark | SDHB-1 protein; contains similarity to Pfam domains PF13085 (2Fe-2S iron-sulfur cluster binding domain), PF13534 (4Fe-4S dicluster domain); contains similarity to Interpro domains IPR004489 (Succinate dehydrogenase/fumarate reductase iron-sulphur protein), IPR025192 (Succinate dehydogenase/fumarate reductase N-terminal), IPR009051 (Alpha-helical ferredoxin), IPR036010 (2Fe-2S ferredoxin-like superfamily), IPR012675 (Beta-grasp domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00006433 | ||||
| Corresponding_transcript | F42A8.2.1 | |||||
| Corresponding_protein | CE01579 | |||||
| Corresponding_PCR_product | [cgc5674]:F42A8.2 | |||||
| cenix:139-h5 | ||||||
| mv_BAA23717 | ||||||
| mv_F42A8.2 | ||||||
| sjj_F42A8.2 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA (130) | ||||||
| RNAi_result | WBRNAi00095617 | |||||
| WBRNAi00072493 | ||||||
| WBRNAi00074341 | ||||||
| WBRNAi00112845 | ||||||
| WBRNAi00074339 | ||||||
| WBRNAi00093548 | ||||||
| WBRNAi00111212 | ||||||
| WBRNAi00072491 | ||||||
| WBRNAi00008783 | ||||||
| WBRNAi00093553 | ||||||
| WBRNAi00074338 | ||||||
| WBRNAi00093559 | ||||||
| WBRNAi00028227 | ||||||
| WBRNAi00093558 | ||||||
| WBRNAi00063770 | ||||||
| WBRNAi00111195 | ||||||
| WBRNAi00093556 | ||||||
| WBRNAi00111192 | ||||||
| WBRNAi00047071 | ||||||
| WBRNAi00025472 | ||||||
| WBRNAi00111198 | ||||||
| WBRNAi00093555 | ||||||
| WBRNAi00063760 | ||||||
| WBRNAi00074337 | ||||||
| WBRNAi00093547 | ||||||
| WBRNAi00022951 | ||||||
| WBRNAi00112905 | ||||||
| WBRNAi00106227 | ||||||
| WBRNAi00072492 | ||||||
| WBRNAi00111222 | ||||||
| WBRNAi00074344 | ||||||
| WBRNAi00093554 | ||||||
| WBRNAi00112785 | ||||||
| WBRNAi00106063 | ||||||
| WBRNAi00113357 | ||||||
| WBRNAi00093546 | ||||||
| WBRNAi00074340 | ||||||
| WBRNAi00111217 | ||||||
| WBRNAi00093560 | ||||||
| WBRNAi00093557 | ||||||
| WBRNAi00093561 | ||||||
| WBRNAi00106978 | ||||||
| WBRNAi00111204 | ||||||
| WBRNAi00074343 | ||||||
| WBRNAi00064409 | ||||||
| WBRNAi00074342 | ||||||
| Microarray_results (16) | ||||||
| Brief_identification | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | Accession_evidence | UniProt | SP:Q09545 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf008069 | |||||
| Method | curated |
