WormBase Tree Display for CDS: Y49E10.15
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| Y49E10.15 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y49E10 | |||
| Structure | Source_exons | 1 | 56 | |||
| 104 | 320 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q9XTU6 | ||
| UniProt | UniProtAcc | Q9XTU6 | ||||
| UniProt_GCRP | UniProtAcc | Q9XTU6 | ||||
| AlphaFold | entry | Q9XTU6 | ||||
| NCBI_protein | GI_number | GI:3979991 | ||||
| TREEFAM | TREEFAM_ID | TF314419 | ||||
| Protein_id | CHROMOSOME_III | CAB11551 | 1 | |||
| DB_remark | SNR-6 protein; contains similarity to Pfam domain PF01423 (LSM domain); contains similarity to Interpro domains IPR001163 (Sm domain, eukaryotic/archaea-type), IPR027078 (Small nuclear ribonucleoprotein E), IPR010920 (LSM domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00004919 | ||||
| Corresponding_transcript | Y49E10.15.1 | |||||
| Corresponding_protein | CE22230 | |||||
| Corresponding_PCR_product | TH:331a9 | |||||
| TH:341d4 | ||||||
| cenix:331-a9 | ||||||
| cenix:341-d4 | ||||||
| mv_Y49E10.15 | ||||||
| sjj_Y49E10.15 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA (64) | ||||||
| RNAi_result (31) | ||||||
| Microarray_results | SMD_Y49E10.15 | |||||
| 186350_at | ||||||
| A_12_P108575 | ||||||
| Aff_Y49E10.O | ||||||
| GPL13394_WBGene00004919 | ||||||
| GPL13914_Y49E10.15 | ||||||
| GPL14144_Y49E10.15_173-232_0.965_3_B | ||||||
| GPL14144_Y49E10.15_216-275_0.975_1_A | ||||||
| GPL14144_Y49E10.15_60-119_0.562_24_C | ||||||
| GPL3518_CE22230 | ||||||
| GPL8304_CE_WBGene00004919_A | ||||||
| GPL8673_Y49E10_15P00071 | ||||||
| GPL8673_Y49E10_15P00079 | ||||||
| GPL8673_Y49E10_15P00082 | ||||||
| GPL9450_Y49E10.15 | ||||||
| cea2.p.78138 | ||||||
| Brief_identification | Probable small nuclear ribonucleoprotein E | Accession_evidence | UniProt | SP:Q9XTU6 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
