WormBase Tree Display for CDS: Y106G6E.4
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| Y106G6E.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y106G6E | |||
| Structure | Source_exons | 1 | 240 | |||
| 561 | 693 | |||||
| 742 | 989 | |||||
| DB_info | Database | KEGG | KEGG_id | 6.3.3.2 | ||
| SwissProt | UniProtAcc | Q9XWE6 | ||||
| UniProt | UniProtAcc | Q9XWE6 | ||||
| UniProt_GCRP | UniProtAcc | Q9XWE6 | ||||
| AlphaFold | entry | Q9XWE6 | ||||
| NCBI_protein | GI_number | GI:3880689 | ||||
| TREEFAM | TREEFAM_ID | TF313668 | ||||
| Protein_id | CHROMOSOME_I | CAA21728 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF01812 (5-formyltetrahydrofolate cyclo-ligase family); contains similarity to Interpro domains IPR037171 (NagB/RpiA transferase-like), IPR024185 (5-formyltetrahydrofolate cyclo-ligase-like domain superfamily), IPR002698 (5-formyltetrahydrofolate cyclo-ligase) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00013708 | ||||
| Corresponding_transcript | Y106G6E.4.1 | |||||
| Corresponding_protein | CE20408 | |||||
| Corresponding_PCR_product | cenix:135-h4 | |||||
| mv_Y106G6E.4 | ||||||
| sjj_Y106G6E.4 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (23) | ||||||
| RNAi_result | WBRNAi00055259 | |||||
| WBRNAi00004501 | ||||||
| WBRNAi00036518 | ||||||
| WBRNAi00103573 | ||||||
| WBRNAi00117022 | ||||||
| Microarray_results | SMD_Y106G6E.4 | |||||
| 193299_at | ||||||
| A_12_P112073 | ||||||
| Aff_Y106G6E.4 | ||||||
| GPL13394_WBGene00013708 | ||||||
| GPL13914_Y106G6E.4 | ||||||
| GPL14144_Y106G6E.4_117-176_0.782_40_B | ||||||
| GPL14144_Y106G6E.4_298-357_0.939_1_A | ||||||
| GPL14144_Y106G6E.4_540-599_0.933_2_C | ||||||
| GPL19516_CGZ0041972 | ||||||
| GPL21109_Y106G6E.4 | ||||||
| GPL3518_CE20408 | ||||||
| GPL8304_CE_WBGene00013708_A | ||||||
| GPL8673_Y106G6E_4P00003 | ||||||
| GPL8673_Y106G6E_4P00229 | ||||||
| GPL8673_Y106G6E_4P00357 | ||||||
| GPL9450_Y106G6E.4 | ||||||
| cea2.p.25174 | ||||||
| Brief_identification | Probable 5-formyltetrahydrofolate cyclo-ligase | Accession_evidence | UniProt | SP:Q9XWE6 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf123586 | |||||
| Method | curated |
