WormBase Tree Display for CDS: K07G5.2
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| K07G5.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K07G5 | |||
| Structure | Source_exons | 1 | 71 | |||
| 115 | 212 | |||||
| 384 | 565 | |||||
| 611 | 712 | |||||
| 756 | 1028 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q21302 | ||
| UniProt | UniProtAcc | Q21302 | ||||
| UniProt_GCRP | UniProtAcc | Q21302 | ||||
| AlphaFold | entry | Q21302 | ||||
| NCBI_protein | GI_number | GI:3878401 | ||||
| TREEFAM | TREEFAM_ID | TF101241 | ||||
| Protein_id | CHROMOSOME_I | CAA95829 | 1 | |||
| DB_remark | XPA-1 protein; contains similarity to Pfam domains PF01286 (XPA protein N-terminal), PF05181 (XPA protein C-terminus); contains similarity to Interpro domains IPR037129 (XPA domain superfamily), IPR000465 (XPA), IPR009061 (Putative DNA-binding domain superfamily), IPR022656 (XPA, C-terminal), IPR022652 (Zinc finger, XPA-type, conserved site) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00006963 | ||||
| Corresponding_transcript | K07G5.2.1 | |||||
| Corresponding_protein | CE06130 | |||||
| Corresponding_PCR_product | cenix:231-g10 | |||||
| mv_K07G5.2 | ||||||
| sjj_K07G5.2 | ||||||
| smd_K07G5.2 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (35) | ||||||
| RNAi_result (11) | ||||||
| Microarray_results | SMD_K07G5.2 | |||||
| SMD_K07G5.2:2 | ||||||
| 192720_at | ||||||
| A_12_P105036 | ||||||
| Aff_K07G5.2 | ||||||
| GPL13394_WBGene00006963 | ||||||
| GPL13914_K07G5.2 | ||||||
| GPL14144_K07G5.2_247-306_0.937_6_C | ||||||
| GPL14144_K07G5.2_471-530_0.948_3_B | ||||||
| GPL14144_K07G5.2_633-692_0.957_1_A | ||||||
| GPL3518_CE06130 | ||||||
| GPL8304_CE_WBGene00006963_A | ||||||
| GPL8304_CE_WBGene00006963_B | ||||||
| GPL8304_CE_WBGene00006963_C | ||||||
| GPL8673_K07G5_2P00219 | ||||||
| GPL8673_K07G5_2P00347 | ||||||
| GPL8673_K07G5_2P00442 | ||||||
| GPL9450_K07G5.2 | ||||||
| cea2.i.03658 | ||||||
| Brief_identification | XPA C-terminal domain-containing protein | Accession_evidence | UniProt | TR:Q21302 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
