WormBase Tree Display for CDS: K06A1.4
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| K06A1.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K06A1 | |||
| Structure | Source_exons | 1 | 345 | |||
| 1224 | 1386 | |||||
| 1475 | 1606 | |||||
| 2043 | 2440 | |||||
| 2489 | 2685 | |||||
| 2733 | 2864 | |||||
| 2913 | 3028 | |||||
| 3075 | 3226 | |||||
| 3273 | 3367 | |||||
| 3419 | 3428 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q09587 | ||
| UniProt | UniProtAcc | Q09587 | ||||
| UniProt_GCRP | UniProtAcc | Q09587 | ||||
| AlphaFold | entry | Q09587 | ||||
| NCBI_protein | GI_number | GI:351064270 | ||||
| TREEFAM | TREEFAM_ID | TF321941 | ||||
| Protein_id | CHROMOSOME_II | CCD72612 | 1 | |||
| DB_remark | NHR-22 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR001723 (Nuclear hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00003621 | ||||
| Corresponding_transcript | K06A1.4.1 | |||||
| Corresponding_protein | CE18017 | |||||
| Corresponding_PCR_product | cenix:200-e7 | |||||
| mv_K06A1.4 | ||||||
| sjj_K06A1.4 | ||||||
| smd_K06A1.4 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (47) | ||||||
| RNAi_result | WBRNAi00007404 | |||||
| WBRNAi00050017 | ||||||
| WBRNAi00107362 | ||||||
| WBRNAi00070204 | ||||||
| WBRNAi00063369 | ||||||
| WBRNAi00063357 | ||||||
| WBRNAi00016650 | ||||||
| WBRNAi00115772 | ||||||
| WBRNAi00034000 | ||||||
| Microarray_results | SMD_K06A1.4 | |||||
| SMD_K06A1.4:2 | ||||||
| 193245_s_at | ||||||
| A_12_P116743 | ||||||
| Aff_K06A1.4 | ||||||
| GPL13394_WBGene00003621 | ||||||
| GPL13914_K06A1.4 | ||||||
| GPL14144_K06A1.4_1426-1485_0.929_10_B | ||||||
| GPL14144_K06A1.4_1510-1569_0.934_8_C | ||||||
| GPL14144_K06A1.4_1568-1627_0.960_1_A | ||||||
| GPL19516_CGZ0027966 | ||||||
| GPL19516_CGZ0027967 | ||||||
| GPL21109_K06A1.4.1 | ||||||
| GPL3518_CE18017 | ||||||
| GPL8304_CE_WBGene00003621_A | ||||||
| GPL8673_K06A1_4P00419 | ||||||
| GPL8673_K06A1_4P01187 | ||||||
| GPL8673_K06A1_4P01456 | ||||||
| GPL9450_K06A1.4 | ||||||
| cea2.p.42472 | ||||||
| Brief_identification | Nuclear hormone receptor family member nhr-22 | Accession_evidence | UniProt | SP:Q09587 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
