WormBase Tree Display for CDS: ZK856.8
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| ZK856.8 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK856 | |||
| Structure | Source_exons | 1 | 67 | |||
| 145 | 201 | |||||
| 252 | 476 | |||||
| 522 | 760 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q23643 | ||
| UniProt | UniProtAcc | Q23643 | ||||
| UniProt_GCRP | UniProtAcc | Q23643 | ||||
| AlphaFold | entry | Q23643 | ||||
| NCBI_protein | GI_number | GI:3881810 | ||||
| TREEFAM | TREEFAM_ID | TF354284 | ||||
| Protein_id | CHROMOSOME_V | CAA94856 | 1 | |||
| DB_remark | CHPF-1 protein; contains similarity to Pfam domain PF13499 (EF-hand domain pair); contains similarity to Interpro domains IPR002048 (EF-hand domain), IPR011992 (EF-hand domain pair) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00014109 | ||||
| Corresponding_transcript | ZK856.8.1 | |||||
| Corresponding_protein | CE06665 | |||||
| Corresponding_PCR_product | cenix:172-f8 | |||||
| mv_G_YK8415 | ||||||
| sjj_ZK856.8 | ||||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA | male_Nanopore_Roach_86245 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_159869 | ||||||
| male_Nanopore_Roach_160488 | ||||||
| male_Nanopore_Roach_165083 | ||||||
| male_Nanopore_Roach_167459 | ||||||
| young_adult_Nanopore_Roach_26516 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_136627 | ||||||
| adult_Nanopore_Roach_109283 | ||||||
| adult_Nanopore_Roach_110356 | ||||||
| adult_Nanopore_Roach_113761 | ||||||
| adult_Nanopore_Roach_11326 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_15204 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_111310 | ||||||
| L3_Nanopore_Roach_23234 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_112190 | ||||||
| L1_Nanopore_Roach_107411 | ||||||
| L4_Nanopore_Roach_9581 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_14084 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_23217 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_53956 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_112801 | ||||||
| L2_Nanopore_Roach_15343 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_102559 | ||||||
| male_Nanopore_Roach_17331 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_112707 | ||||||
| L3_Nanopore_Roach_14993 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_26643 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_110825 | ||||||
| adult_Nanopore_Roach_22522 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_24142 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_110751 | ||||||
| L4_Nanopore_Roach_71585 | ||||||
| EM_Nanopore_Li_272511 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_8995 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_28392 | Inferred_automatically | transcript_builder.pl | ||||
| EC036190 | Inferred_automatically | transcript_builder.pl | ||||
| yk1221b03.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1356g07.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_28031 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_260460 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR037C3_1 | Inferred_automatically | transcript_builder.pl | ||||
| FN894891 | Inferred_automatically | transcript_builder.pl | ||||
| EC022506 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_215445 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_33718 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_237495 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1406|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| yk576h2.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk702e10.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_210586 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00033583 | |||||
| WBRNAi00022203 | ||||||
| WBRNAi00080519 | ||||||
| WBRNAi00027568 | ||||||
| WBRNAi00027110 | ||||||
| WBRNAi00059779 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | EF-hand domain-containing protein | Accession_evidence | UniProt | TR:Q23643 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf008052 | |||||
| WBsf129949 | ||||||
| Method | curated |
