WormBase Tree Display for CDS: Y87G2A.5
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| Y87G2A.5 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y87G2A | |||
| Structure | Source_exons | 1 | 220 | |||
| 865 | 1452 | |||||
| 2538 | 3610 | |||||
| 4862 | 5432 | |||||
| 7224 | 7523 | |||||
| 9273 | 9604 | |||||
| 10805 | 10873 | |||||
| DB_info | Database | KEGG | KEGG_id | 6.1.1.9 | ||
| SwissProt | UniProtAcc | Q9U1Q4 | ||||
| UniProt | UniProtAcc | Q9U1Q4 | ||||
| UniProt_GCRP | UniProtAcc | Q9U1Q4 | ||||
| AlphaFold | entry | Q9U1Q4 | ||||
| NCBI_protein | GI_number | GI:6425518 | ||||
| TREEFAM | TREEFAM_ID | TF300648 | ||||
| Protein_id | CHROMOSOME_I | CAB60428 | 1 | |||
| DB_remark | GLP-4 protein; contains similarity to Pfam domains PF00133 (tRNA synthetases class I (I, L, M and V)), PF08264 (Anticodon-binding domain of tRNA ligase); contains similarity to Interpro domains IPR037118 (Valyl-tRNA synthetase, tRNA-binding arm superfamily), IPR013155 (Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding), IPR002300 (Aminoacyl-tRNA synthetase, class Ia), IPR009080 (Aminoacyl-tRNA synthetase, class Ia, anticodon-binding), IPR009008 (Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain), IPR002303 (Valine-tRNA ligase), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00006936 | ||||
| Corresponding_transcript | Y87G2A.5.1 | |||||
| Corresponding_protein | CE24685 | |||||
| Corresponding_PCR_product | cenix:116-a2 | |||||
| mv_Y87G2A.5 | ||||||
| sjj_Y87G2A.k | ||||||
| sjj_Y87G2A.l | ||||||
| sjj_Y87G2A.m | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA | male_Nanopore_Roach_123714 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_5726 | ||||||
| young_adult_Nanopore_Roach_17371 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_20378 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_25174 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_29426 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_36604 | ||||||
| young_adult_Nanopore_Roach_44352 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_82396 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_91093 | ||||||
| young_adult_Nanopore_Roach_102535 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_73121 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_17495 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_72967 | ||||||
| L2_Nanopore_Roach_18207 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_84204 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_17820 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_74868 | ||||||
| L3_Nanopore_Roach_15557 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_45318 | ||||||
| L3_Nanopore_Roach_30620 | ||||||
| L3_Nanopore_Roach_76222 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_21412 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_89582 | ||||||
| L1_Nanopore_Roach_21429 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_37602 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_11637 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_21960 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_76247 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_65444 | ||||||
| L4_Nanopore_Roach_14226 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_36978 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_14734 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_17280 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_81087 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_64658 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_25314 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_84244 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_43451 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_38004 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_15910 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_21349 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_41725 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_85891 | ||||||
| L1_Nanopore_Roach_14997 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_38847 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_66508 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_64839 | ||||||
| L3_Nanopore_Roach_61334 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_20869 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_78147 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_80595 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_76875 | ||||||
| L2_Nanopore_Roach_5721 | ||||||
| L4_Nanopore_Roach_10008 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_85170 | ||||||
| male_Nanopore_Roach_18015 | Inferred_automatically | transcript_builder.pl | ||||
| yk1389d02.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_32132 | Inferred_automatically | transcript_builder.pl | ||||
| yk1176e05.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_249717 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_165462 | Inferred_automatically | transcript_builder.pl | ||||
| yk149d2.5 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF091A6_1 | Inferred_automatically | transcript_builder.pl | ||||
| yk773b11.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1604f01.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_91097 | Inferred_automatically | transcript_builder.pl | ||||
| EC002454 | Inferred_automatically | transcript_builder.pl | ||||
| yk1585f05.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_37688 | Inferred_automatically | transcript_builder.pl | ||||
| yk1604f01.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_221119 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_112851 | Inferred_automatically | transcript_builder.pl | ||||
| yk295e5.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_194392 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_304521 | Inferred_automatically | transcript_builder.pl | ||||
| EC006671 | Inferred_automatically | transcript_builder.pl | ||||
| EC022296 | Inferred_automatically | transcript_builder.pl | ||||
| yk443b11.5 | Inferred_automatically | transcript_builder.pl | ||||
| EC013012 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_199919 | Inferred_automatically | transcript_builder.pl | ||||
| yk649e7.3 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_118638 | Inferred_automatically | transcript_builder.pl | ||||
| EC000475 | Inferred_automatically | transcript_builder.pl | ||||
| yk49e5.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_57733 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_227733 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_216463 | Inferred_automatically | transcript_builder.pl | ||||
| yk1211f08.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1272g12.3 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_242971 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_19805 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_219392 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_56371 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_153201 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_215544 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_100311 | Inferred_automatically | transcript_builder.pl | ||||
| yk1211f08.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk782e09.5 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG2042|c6_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_251048 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_282879 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_218296 | Inferred_automatically | transcript_builder.pl | ||||
| yk1389d02.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk318b12.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_221805 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_278055 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_211518 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR091A6_1 | Inferred_automatically | transcript_builder.pl | ||||
| EC011366 | Inferred_automatically | transcript_builder.pl | ||||
| yk1734e07.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_241791 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_105724 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_68358 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_220866 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_190776 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_61353 | Inferred_automatically | transcript_builder.pl | ||||
| yk1734e07.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1134e09.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_307813 | Inferred_automatically | transcript_builder.pl | ||||
| yk1134e09.3 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (21) | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Valine--tRNA ligase | Accession_evidence | UniProt | SP:Q9U1Q4 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf003413 | |||||
| Method | curated |
