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WormBase Tree Display for CDS: Y49E10.15

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Name Class

Y49E10.15EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceY49E10
StructureSource_exons156
104320
DB_infoDatabaseSwissProtUniProtAccQ9XTU6
UniProtUniProtAccQ9XTU6
UniProt_GCRPUniProtAccQ9XTU6
AlphaFoldentryQ9XTU6
NCBI_proteinGI_numberGI:3979991
TREEFAMTREEFAM_IDTF314419
Protein_idCHROMOSOME_IIICAB115511
DB_remarkSNR-6 protein; contains similarity to Pfam domain PF01423 (LSM domain); contains similarity to Interpro domains IPR001163 (Sm domain, eukaryotic/archaea-type), IPR027078 (Small nuclear ribonucleoprotein E), IPR010920 (LSM domain superfamily)
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00004919
Corresponding_transcriptY49E10.15.1
Corresponding_proteinCE22230
Corresponding_PCR_productTH:331a9
TH:341d4
cenix:331-a9
cenix:341-d4
mv_Y49E10.15
sjj_Y49E10.15
Corresponding_oligo_set (15)
Matching_cDNAmale_Nanopore_Roach_94395
male_Nanopore_Roach_94868
male_Nanopore_Roach_98692
male_Nanopore_Roach_99717
male_Nanopore_Roach_99880
male_Nanopore_Roach_123049Inferred_automaticallytranscript_builder.pl
young_adult_Nanopore_Roach_73393
young_adult_Nanopore_Roach_73597
young_adult_Nanopore_Roach_73730
young_adult_Nanopore_Roach_74295
young_adult_Nanopore_Roach_74582
young_adult_Nanopore_Roach_74916
young_adult_Nanopore_Roach_74971
young_adult_Nanopore_Roach_75259
young_adult_Nanopore_Roach_76928
young_adult_Nanopore_Roach_101806Inferred_automaticallytranscript_builder.pl
L3_Nanopore_Roach_55950
L3_Nanopore_Roach_56623
L1_Nanopore_Roach_60089
L3_Nanopore_Roach_75711Inferred_automaticallytranscript_builder.pl
L3_Nanopore_Roach_57699
L2_Nanopore_Roach_61967
adult_Nanopore_Roach_56372
L3_Nanopore_Roach_43239
L2_Nanopore_Roach_61814
L1_Nanopore_Roach_60451
L1_Nanopore_Roach_56846
L1_Nanopore_Roach_57951
L3_Nanopore_Roach_54106
adult_Nanopore_Roach_60726
L1_Nanopore_Roach_57779
adult_Nanopore_Roach_83631Inferred_automaticallytranscript_builder.pl
adult_Nanopore_Roach_56716
adult_Nanopore_Roach_60938
L1_Nanopore_Roach_60716
L1_Nanopore_Roach_60925
adult_Nanopore_Roach_60229
L4_Nanopore_Roach_52352Inferred_automaticallytranscript_builder.pl
adult_Nanopore_Roach_62208
L1_Nanopore_Roach_80525Inferred_automaticallytranscript_builder.pl
adult_Nanopore_Roach_58498
L1_Nanopore_Roach_60497
adult_Nanopore_Roach_58213
L1_Nanopore_Roach_56257
L2_Nanopore_Roach_80072Inferred_automaticallytranscript_builder.pl
adult_Nanopore_Roach_57989
adult_Nanopore_Roach_60802
adult_Nanopore_Roach_60839
adult_Nanopore_Roach_59651
adult_Nanopore_Roach_61451
adult_Nanopore_Roach_62489
L1_Nanopore_Roach_58314
L1_Nanopore_Roach_56899
L1_Nanopore_Li_131287Inferred_automaticallytranscript_builder.pl
EM_Nanopore_Li_319000Inferred_automaticallytranscript_builder.pl
OSTF001E1_2Inferred_automaticallytranscript_builder.pl
OSTR034B1_1Inferred_automaticallytranscript_builder.pl
OSTF001E1_1Inferred_automaticallytranscript_builder.pl
elegans_PE_SS_GG2485|c0_g2_i1Inferred_automaticallytranscript_builder.pl
EM_Nanopore_Li_153237Inferred_automaticallytranscript_builder.pl
YA_Nanopore_Li_303647Inferred_automaticallytranscript_builder.pl
elegans_PE_SS_GG2485|c0_g1_i1Inferred_automaticallytranscript_builder.pl
OSTF034B1_1Inferred_automaticallytranscript_builder.pl
L1_Nanopore_Li_277218Inferred_automaticallytranscript_builder.pl
RNAi_result (31)
Microarray_results (16)
Brief_identificationProbable small nuclear ribonucleoprotein EAccession_evidenceUniProtSP:Q9XTU6
RNASeq_FPKM (74)
Methodcurated