WormBase Tree Display for CDS: Y47G6A.20b
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| Y47G6A.20b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y47G6A | |||
| Structure | Source_exons | 1 | 96 | |||
| 154 | 318 | |||||
| 373 | 531 | |||||
| 918 | 1120 | |||||
| 2279 | 2492 | |||||
| 3169 | 3312 | |||||
| 3779 | 3913 | |||||
| 4883 | 5560 | |||||
| 6793 | 7248 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q9N3S4 | ||
| UniProtIsoformAcc | Q9N3S4-1 | |||||
| UniProt | UniProtAcc | Q9N3S4 | ||||
| UniProt_GCRP | UniProtAcc | Q9N3S4 | ||||
| AlphaFold | entry | Q9N3S4 | ||||
| NCBI_protein | GI_number | GI:373220165 | ||||
| TREEFAM | TREEFAM_ID | TF313987 | ||||
| Protein_id | CHROMOSOME_I | CCD72565 | 1 | |||
| DB_remark | RNP-6 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR006532 (Poly-U binding splicing factor, PUF60-like), IPR003954 (RNA recognition motif domain, eukaryote), IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | AV185909 | |||
| Visible | Gene | WBGene00004389 | ||||
| Corresponding_transcript | Y47G6A.20b.1 | |||||
| Corresponding_protein | CE24366 | |||||
| Corresponding_PCR_product | cenix:90-g11 | |||||
| mv_Y47G6A.20a | ||||||
| mv_Y47G6A.20b | ||||||
| sjj_Y47G6A_245.f | ||||||
| sjj_Y47G6A_245.g | ||||||
| Corresponding_oligo_set (35) | ||||||
| Matching_cDNA | male_Nanopore_Roach_112883 | |||||
| male_Nanopore_Roach_113856 | ||||||
| male_Nanopore_Roach_114557 | ||||||
| male_Nanopore_Roach_125364 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_154441 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_3404 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_4419 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_21674 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_22255 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_24145 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_45810 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_94128 | ||||||
| young_adult_Nanopore_Roach_96434 | ||||||
| young_adult_Nanopore_Roach_104349 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_128139 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_82548 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_81942 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_13903 | ||||||
| L1_Nanopore_Roach_73077 | ||||||
| L4_Nanopore_Roach_53658 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_38890 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_68068 | ||||||
| L3_Nanopore_Roach_19239 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_77571 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_38069 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_19665 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_105150 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_39223 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_85769 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_69605 | ||||||
| L1_Nanopore_Li_54498 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR089C6_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_21703 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_168238 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_55555 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_308145 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_370957 | Inferred_automatically | transcript_builder.pl | ||||
| yk493a1.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk622f11.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_155491 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_22528 | Inferred_automatically | transcript_builder.pl | ||||
| yk381d5.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_321079 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_339602 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_126988 | Inferred_automatically | transcript_builder.pl | ||||
| EB996324 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_147871 | Inferred_automatically | transcript_builder.pl | ||||
| yk282c9.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk596g2.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_66045 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_174112 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_320574 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (17) | ||||||
| Microarray_results (39) | ||||||
| Brief_identification | Poly(U)-binding-splicing factor rnp-6 | Accession_evidence | UniProt | SP:Q9N3S4 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
