WormBase Tree Display for CDS: Y47G6A.12
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| Y47G6A.12 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y47G6A | |||
| Structure | Source_exons | 1 | 744 | |||
| 795 | 954 | |||||
| 1012 | 1411 | |||||
| 2144 | 2369 | |||||
| 2419 | 2541 | |||||
| 2593 | 2894 | |||||
| 2945 | 3839 | |||||
| 4194 | 4372 | |||||
| 4423 | 4518 | |||||
| 4571 | 5234 | |||||
| DB_info | Database | KEGG | KEGG_id | 3.4.22.49 | ||
| SwissProt | UniProtAcc | G5ED39 | ||||
| UniProt | UniProtAcc | G5ED39 | ||||
| UniProt_GCRP | UniProtAcc | G5ED39 | ||||
| AlphaFold | entry | G5ED39 | ||||
| NCBI_protein | GI_number | GI:373220157 | ||||
| TREEFAM | TREEFAM_ID | TF316858 | ||||
| Protein_id | CHROMOSOME_I | CCD72557 | 1 | |||
| DB_remark | SEP-1 protein; contains similarity to Pfam domain PF03568 (Peptidase family C50); contains similarity to Interpro domain IPR005314 (Peptidase C50, separase) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00004775 | ||||
| Corresponding_transcript | Y47G6A.12.1 | |||||
| Corresponding_protein | CE22098 | |||||
| Corresponding_PCR_product | [cgc4997]:sep-1 | |||||
| cenix:72-d11 | ||||||
| mv_Y47G6A.12 | ||||||
| sjj_Y47G6A_246.b | ||||||
| Corresponding_oligo_set (13) | ||||||
| Matching_cDNA | male_Nanopore_Roach_53860 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_101125 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_105046 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_124391 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_45756 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_79183 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_83392 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_92474 | ||||||
| young_adult_Nanopore_Roach_93555 | ||||||
| young_adult_Nanopore_Roach_96232 | ||||||
| young_adult_Nanopore_Roach_96421 | ||||||
| young_adult_Nanopore_Roach_103326 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_107229 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_123219 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_77147 | ||||||
| adult_Nanopore_Roach_76346 | ||||||
| L1_Nanopore_Roach_81716 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_84027 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_76816 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_63748 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_79649 | ||||||
| adult_Nanopore_Roach_73989 | ||||||
| L3_Nanopore_Roach_59008 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_84897 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_65788 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_79516 | ||||||
| L2_Nanopore_Roach_62833 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_75776 | ||||||
| adult_Nanopore_Roach_74982 | ||||||
| adult_Nanopore_Roach_78389 | ||||||
| yk200f10.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_189244 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_152902 | Inferred_automatically | transcript_builder.pl | ||||
| yk349c7.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_347371 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_285797 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_238070 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_146442 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_187432 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_92320 | Inferred_automatically | transcript_builder.pl | ||||
| yk598d10.5 | Inferred_automatically | transcript_builder.pl | ||||
| EC004018 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_236739 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_295938 | Inferred_automatically | transcript_builder.pl | ||||
| yk1438f08.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk578b6.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_258244 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_315509 | Inferred_automatically | transcript_builder.pl | ||||
| yk134d2.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_299222 | Inferred_automatically | transcript_builder.pl | ||||
| yk297e12.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk429h5.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_344209 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_282764 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_271603 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_329473 | Inferred_automatically | transcript_builder.pl | ||||
| yk416d8.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk127h4.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk277d4.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_364061 | Inferred_automatically | transcript_builder.pl | ||||
| AF399825 | Inferred_automatically | transcript_builder.pl | ||||
| yk250c9.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk550e3.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_125801 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_357629 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_119957 | Inferred_automatically | transcript_builder.pl | ||||
| yk611a4.5 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1907|c2_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| yk1046h03.5 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (20) | ||||||
| Microarray_results (14) | ||||||
| Brief_identification | Separin homolog sep-1 | Accession_evidence | UniProt | SP:G5ED39 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf000138 | |||||
| Method | curated |
