WormBase Tree Display for CDS: Y46G5A.5
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Y46G5A.5 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y46G5A | |||
Structure | Source_exons | 1 | 134 | |||
387 | 488 | |||||
564 | 823 | |||||
876 | 1042 | |||||
DB_info | Database | KEGG | KEGG_id | 2.7.8.11 | ||
TrEMBL | UniProtAcc | Q9U2G1 | ||||
UniProt | UniProtAcc | Q9U2G1 | ||||
UniProt_GCRP | UniProtAcc | Q9U2G1 | ||||
AlphaFold | entry | Q9U2G1 | ||||
NCBI_protein | GI_number | GI:6425307 | ||||
TREEFAM | TREEFAM_ID | TF314603 | ||||
Protein_id | CHROMOSOME_II | CAB60350 | 1 | |||
DB_remark | PISY-1 protein; contains similarity to Pfam domain PF01066 (CDP-alcohol phosphatidyltransferase); contains similarity to Interpro domains IPR014387 (CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote), IPR000462 (CDP-alcohol phosphatidyltransferase), IPR043130 (CDP-alcohol phosphatidyltransferase, transmembrane domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00012897 | ||||
Corresponding_transcript | Y46G5A.5.1 | |||||
Corresponding_protein | CE21973 | |||||
Corresponding_PCR_product | cenix:100-h10 | |||||
mv_Y46G5A.5 | ||||||
sjj_Y46G5.e | ||||||
Corresponding_oligo_set | 181762_s_at | |||||
GPL13914_Y46G5A.5 | ||||||
GPL14144_Y46G5A.5_20-79_0.912_1_A | ||||||
GPL14144_Y46G5A.5_375-434_0.631_14_C | ||||||
GPL14144_Y46G5A.5_428-487_0.681_7_B | ||||||
GPL3518_CE21973 | ||||||
GPL8304_CE_WBGene00012897_A | ||||||
GPL8673_Y46G5A_5P00074 | ||||||
GPL8673_Y46G5A_5P00297 | ||||||
GPL8673_Y46G5A_5P00524 | ||||||
Matching_cDNA | male_Nanopore_Roach_49034 | Inferred_automatically | transcript_builder.pl | |||
young_adult_Nanopore_Roach_45000 | Inferred_automatically | transcript_builder.pl | ||||
young_adult_Nanopore_Roach_45798 | Inferred_automatically | transcript_builder.pl | ||||
young_adult_Nanopore_Roach_49973 | Inferred_automatically | transcript_builder.pl | ||||
young_adult_Nanopore_Roach_113265 | ||||||
L2_Nanopore_Roach_39997 | Inferred_automatically | transcript_builder.pl | ||||
adult_Nanopore_Roach_94442 | ||||||
L2_Nanopore_Roach_39376 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Roach_43093 | Inferred_automatically | transcript_builder.pl | ||||
male_Nanopore_Roach_527 | Inferred_automatically | transcript_builder.pl | ||||
male_Nanopore_Roach_44108 | Inferred_automatically | transcript_builder.pl | ||||
adult_Nanopore_Roach_91822 | ||||||
adult_Nanopore_Roach_42436 | Inferred_automatically | transcript_builder.pl | ||||
adult_Nanopore_Roach_38173 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Roach_90373 | ||||||
L2_Nanopore_Roach_91002 | ||||||
L3_Nanopore_Roach_42007 | Inferred_automatically | transcript_builder.pl | ||||
L4_Nanopore_Roach_27947 | Inferred_automatically | transcript_builder.pl | ||||
L2_Nanopore_Roach_44093 | Inferred_automatically | transcript_builder.pl | ||||
L4_Nanopore_Roach_58678 | ||||||
L4_Nanopore_Roach_25495 | Inferred_automatically | transcript_builder.pl | ||||
yk645g2.5 | Inferred_automatically | transcript_builder.pl | ||||
FN889778 | Inferred_automatically | transcript_builder.pl | ||||
OSTR100D12_1 | Inferred_automatically | transcript_builder.pl | ||||
elegans_PE_SS_GG3182|c4_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
FN872927 | Inferred_automatically | transcript_builder.pl | ||||
yk518d7.5 | Inferred_automatically | transcript_builder.pl | ||||
FN872928 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Li_221172 | Inferred_automatically | transcript_builder.pl | ||||
yk455d12.5 | Inferred_automatically | transcript_builder.pl | ||||
yk527a8.5 | Inferred_automatically | transcript_builder.pl | ||||
yk402c9.5 | Inferred_automatically | transcript_builder.pl | ||||
EM_Nanopore_Li_251997 | Inferred_automatically | transcript_builder.pl | ||||
EM_Nanopore_Li_264219 | Inferred_automatically | transcript_builder.pl | ||||
EM_Nanopore_Li_253130 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Li_230645 | Inferred_automatically | transcript_builder.pl | ||||
OSTF100D12_1 | Inferred_automatically | transcript_builder.pl | ||||
YA_Nanopore_Li_252881 | Inferred_automatically | transcript_builder.pl | ||||
YA_Nanopore_Li_243892 | Inferred_automatically | transcript_builder.pl | ||||
yk630c8.5 | Inferred_automatically | transcript_builder.pl | ||||
elegans_PE_SS_GG3182|c4_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Li_230641 | Inferred_automatically | transcript_builder.pl | ||||
yk467b3.5 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Li_128416 | Inferred_automatically | transcript_builder.pl | ||||
EM_Nanopore_Li_138126 | Inferred_automatically | transcript_builder.pl | ||||
RNAi_result | WBRNAi00020650 | |||||
WBRNAi00056693 | ||||||
WBRNAi00037142 | ||||||
Microarray_results (12) | ||||||
Brief_identification | CDP-diacylglycerol--inositol 3-phosphatidyltransferase | Accession_evidence | UniProt | TR:Q9U2G1 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |