WormBase Tree Display for CDS: Y46E12BL.2a
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| Y46E12BL.2a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y46E12BL | |||
| Structure | Source_exons | 1 | 68 | |||
| 134 | 403 | |||||
| 1326 | 1399 | |||||
| 1449 | 1612 | |||||
| 2473 | 2779 | |||||
| 3940 | 4616 | |||||
| 6389 | 7321 | |||||
| 8613 | 9913 | |||||
| 11387 | 11597 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q965N8 | ||
| UniProt | UniProtAcc | Q965N8 | ||||
| UniProt_GCRP | UniProtAcc | Q965N8 | ||||
| AlphaFold | entry | Q965N8 | ||||
| NCBI_protein | GI_number | GI:373253776 | ||||
| Protein_id | CHROMOSOME_II | CCD61142 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF08161 (Ribosomal RNA-processing protein 12, HEAT repeats); contains similarity to Interpro domains IPR012978 (Ribosomal RNA-processing protein 12-like, conserved domain), IPR011989 (Armadillo-like helical), IPR016024 (Armadillo-type fold) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Visible | Gene | WBGene00021595 | ||||
| Corresponding_transcript | Y46E12BL.2a.1 | |||||
| Y46E12BL.2a.2 | ||||||
| Corresponding_protein | CE27472 | |||||
| Corresponding_PCR_product (2) | ||||||
| Corresponding_oligo_set (19) | ||||||
| Matching_cDNA | male_Nanopore_Roach_101220 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_157591 | ||||||
| young_adult_Nanopore_Roach_6076 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_119876 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_125788 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_131576 | ||||||
| male_Nanopore_Roach_5898 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_103518 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_100096 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_82147 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_17751 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_68388 | ||||||
| L1_Nanopore_Roach_103998 | ||||||
| L1_Nanopore_Roach_5417 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_98551 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_57157 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_108124 | ||||||
| L2_Nanopore_Roach_5717 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_105457 | ||||||
| L3_Nanopore_Roach_94088 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_99107 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_5131 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_190570 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG7623|c4_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_237134 | Inferred_automatically | transcript_builder.pl | ||||
| yk1120a04.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_334512 | Inferred_automatically | transcript_builder.pl | ||||
| yk1120a04.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_154640 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_192131 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_318432 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_160124 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_163145 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG7623|c2_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| yk1566a08.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk368e6.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_367654 | Inferred_automatically | transcript_builder.pl | ||||
| RST5_373291 | Inferred_automatically | transcript_builder.pl | ||||
| yk1342g08.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1566a08.3 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00117257 | |||||
| WBRNAi00056663 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Ribosomal RNA-processing protein 12-like conserved domain-containing protein | Accession_evidence | UniProt | TR:Q965N8 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf015150 | |||||
| Method | curated |
