WormBase Tree Display for CDS: Y106G6E.4
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| Y106G6E.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y106G6E | |||
| Structure | Source_exons | 1 | 240 | |||
| 561 | 693 | |||||
| 742 | 989 | |||||
| DB_info | Database | KEGG | KEGG_id | 6.3.3.2 | ||
| SwissProt | UniProtAcc | Q9XWE6 | ||||
| UniProt | UniProtAcc | Q9XWE6 | ||||
| UniProt_GCRP | UniProtAcc | Q9XWE6 | ||||
| AlphaFold | entry | Q9XWE6 | ||||
| NCBI_protein | GI_number | GI:3880689 | ||||
| TREEFAM | TREEFAM_ID | TF313668 | ||||
| Protein_id | CHROMOSOME_I | CAA21728 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF01812 (5-formyltetrahydrofolate cyclo-ligase family); contains similarity to Interpro domains IPR037171 (NagB/RpiA transferase-like), IPR024185 (5-formyltetrahydrofolate cyclo-ligase-like domain superfamily), IPR002698 (5-formyltetrahydrofolate cyclo-ligase) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00013708 | ||||
| Corresponding_transcript | Y106G6E.4.1 | |||||
| Corresponding_protein | CE20408 | |||||
| Corresponding_PCR_product | cenix:135-h4 | |||||
| mv_Y106G6E.4 | ||||||
| sjj_Y106G6E.4 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA | male_Nanopore_Roach_105398 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_113548 | ||||||
| young_adult_Nanopore_Roach_83793 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_77613 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_62349 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_65756 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_42436 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_72342 | ||||||
| adult_Nanopore_Roach_67625 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_72426 | ||||||
| L2_Nanopore_Roach_66314 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_74043 | ||||||
| elegans_PE_SS_GG2203|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_139692 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR074A5_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_302296 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_126548 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_155017 | Inferred_automatically | transcript_builder.pl | ||||
| FN893653 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF074A5_1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_263452 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_147324 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_288578 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00055259 | |||||
| WBRNAi00004501 | ||||||
| WBRNAi00036518 | ||||||
| WBRNAi00103573 | ||||||
| WBRNAi00117022 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Probable 5-formyltetrahydrofolate cyclo-ligase | Accession_evidence | UniProt | SP:Q9XWE6 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf123586 | |||||
| Method | curated |
