WormBase Tree Display for CDS: T20B12.2
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| T20B12.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T20B12 | |||
| Structure | Source_exons | 1 | 208 | |||
| 833 | 1395 | |||||
| 1448 | 1612 | |||||
| 1658 | 1744 | |||||
| DB_info | Database | SwissProt | UniProtAcc | P32085 | ||
| UniProt | UniProtAcc | P32085 | ||||
| UniProt_GCRP | UniProtAcc | P32085 | ||||
| AlphaFold | entry | P32085 | ||||
| NCBI_protein | GI_number | GI:351061293 | ||||
| TREEFAM | TREEFAM_ID | TF300102 | ||||
| Protein_id | CHROMOSOME_III | CCD69071 | 1 | |||
| DB_remark | TBP-1 protein; contains similarity to Pfam domain PF00352 (Transcription factor TFIID (or TATA-binding protein, TBP)); contains similarity to Interpro domains IPR012295 (TBP domain superfamily), IPR000814 (TATA-box binding protein) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00006542 | ||||
| Corresponding_transcript | T20B12.2.1 | |||||
| Corresponding_protein | CE01408 | |||||
| Corresponding_PCR_product | TH:302C7 | |||||
| TH:340H4 | ||||||
| cenix:302-c7 | ||||||
| cenix:340-h4 | ||||||
| mv_AAA03582 | ||||||
| mv_T20B12.2 | ||||||
| sjj_T20B12.2 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA | male_Nanopore_Roach_52837 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_16189 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_54138 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_30237 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_99907 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_16873 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_64716 | ||||||
| L4_Nanopore_Roach_9354 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_45010 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_87481 | ||||||
| L1_Nanopore_Roach_13996 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_13662 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_47322 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_46477 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_45962 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_14961 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_43671 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_209964 | Inferred_automatically | transcript_builder.pl | ||||
| CK588866 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_214748 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_341963 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG6614|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| AF303249 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_53962 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_53075 | Inferred_automatically | transcript_builder.pl | ||||
| CK586440 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_270095 | Inferred_automatically | transcript_builder.pl | ||||
| CK589230 | Inferred_automatically | transcript_builder.pl | ||||
| CK586441 | Inferred_automatically | transcript_builder.pl | ||||
| CK582349 | Inferred_automatically | transcript_builder.pl | ||||
| yk1750g07.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1707d08.3 | Inferred_automatically | transcript_builder.pl | ||||
| FN879810 | Inferred_automatically | transcript_builder.pl | ||||
| yk1750g07.5 | Inferred_automatically | transcript_builder.pl | ||||
| CK586438 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_32373 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_64307 | Inferred_automatically | transcript_builder.pl | ||||
| CK579681 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_235524 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_361644 | Inferred_automatically | transcript_builder.pl | ||||
| CK588868 | Inferred_automatically | transcript_builder.pl | ||||
| FN874052 | Inferred_automatically | transcript_builder.pl | ||||
| CK580937 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_189393 | Inferred_automatically | transcript_builder.pl | ||||
| CK578675 | Inferred_automatically | transcript_builder.pl | ||||
| FN874562 | Inferred_automatically | transcript_builder.pl | ||||
| CK586439 | Inferred_automatically | transcript_builder.pl | ||||
| CK582350 | Inferred_automatically | transcript_builder.pl | ||||
| CK582351 | Inferred_automatically | transcript_builder.pl | ||||
| FN887864 | Inferred_automatically | transcript_builder.pl | ||||
| FN897789 | Inferred_automatically | transcript_builder.pl | ||||
| CK588859 | Inferred_automatically | transcript_builder.pl | ||||
| CK586437 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_258269 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (50) | ||||||
| Microarray_results (17) | ||||||
| Brief_identification | TATA-box-binding protein | Accession_evidence | UniProt | SP:P32085 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf014820 | |||||
| Method | curated |
