WormBase Tree Display for CDS: T01B7.4
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| T01B7.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T01B7 | |||
| Structure | Source_exons | 1 | 102 | |||
| 157 | 315 | |||||
| 361 | 541 | |||||
| 979 | 1088 | |||||
| DB_info | Database | KEGG | KEGG_id | 5.2.1.8 | ||
| SwissProt | UniProtAcc | P52018 | ||||
| UniProt | UniProtAcc | P52018 | ||||
| UniProt_GCRP | UniProtAcc | P52018 | ||||
| AlphaFold | entry | P52018 | ||||
| NCBI_protein | GI_number | GI:3879232 | ||||
| TREEFAM | TREEFAM_ID | TF312958 | ||||
| Protein_id | CHROMOSOME_II | CAA91297 | 1 | |||
| DB_remark | CYN-11 protein; contains similarity to Pfam domain PF00160 (Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD); contains similarity to Interpro domains IPR029000 (Cyclophilin-like domain superfamily), IPR024936 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase), IPR002130 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00000887 | ||||
| Corresponding_transcript | T01B7.4.1 | |||||
| Corresponding_protein | CE03588 | |||||
| Corresponding_PCR_product | cenix:211-b5 | |||||
| mv_AAC47115 | ||||||
| mv_T01B7.4 | ||||||
| sjj_T01B7.4 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | male_Nanopore_Roach_53454 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_143793 | ||||||
| young_adult_Nanopore_Roach_4609 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_27831 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_54801 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_115154 | ||||||
| young_adult_Nanopore_Roach_116262 | ||||||
| L1_Nanopore_Roach_28160 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_27785 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_89623 | ||||||
| male_Nanopore_Roach_4531 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_46525 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_3906 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_89943 | ||||||
| L4_Nanopore_Roach_2683 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_65651 | ||||||
| adult_Nanopore_Roach_93457 | ||||||
| L2_Nanopore_Roach_47806 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_89078 | ||||||
| L1_Nanopore_Roach_24254 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_4636 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_4268 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_4278 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_46964 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_91799 | ||||||
| OSTF153G8_1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_3774 | Inferred_automatically | transcript_builder.pl | ||||
| FN899544 | Inferred_automatically | transcript_builder.pl | ||||
| U34955 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_65156 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF098E10_1 | Inferred_automatically | transcript_builder.pl | ||||
| yk704g7.5 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR098E10_1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_63169 | Inferred_automatically | transcript_builder.pl | ||||
| FN877592 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_316467 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_42553 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_4072 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR153G8_1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_35321 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_94780 | Inferred_automatically | transcript_builder.pl | ||||
| yk704g7.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_29568 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_4551 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_30064 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG3153|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| FN899545 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_76745 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00103495 | |||||
| WBRNAi00062346 | ||||||
| WBRNAi00017940 | ||||||
| WBRNAi00080136 | ||||||
| WBRNAi00027812 | ||||||
| WBRNAi00112131 | ||||||
| WBRNAi00062347 | ||||||
| WBRNAi00052082 | ||||||
| WBRNAi00080048 | ||||||
| WBRNAi00076625 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Peptidyl-prolyl cis-trans isomerase 11 | Accession_evidence | UniProt | SP:P52018 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf019389 | |||||
| Method | curated |
