WormBase Tree Display for CDS: R186.3
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| R186.3 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R186 | |||
| Structure | Source_exons | 1 | 93 | |||
| 137 | 239 | |||||
| 289 | 422 | |||||
| 474 | 584 | |||||
| 687 | 886 | |||||
| 933 | 1014 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q22013 | ||
| UniProt | UniProtAcc | Q22013 | ||||
| UniProt_GCRP | UniProtAcc | Q22013 | ||||
| AlphaFold | entry | Q22013 | ||||
| NCBI_protein | GI_number | GI:3879200 | ||||
| TREEFAM | TREEFAM_ID | TF106190 | ||||
| Protein_id | CHROMOSOME_V | CAB01443 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF09439 (Signal recognition particle receptor beta subunit); contains similarity to Interpro domains IPR019009 (Signal recognition particle receptor, beta subunit), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR005225 (Small GTP-binding protein domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00011306 | ||||
| Corresponding_transcript | R186.3.1 | |||||
| Corresponding_protein | CE12874 | |||||
| Corresponding_PCR_product | cenix:118-f11 | |||||
| mv_R186.3 | ||||||
| sjj_R186.3 | ||||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA | male_Nanopore_Roach_120658 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_154516 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_13257 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_29342 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_128242 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_129448 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_132857 | ||||||
| young_adult_Nanopore_Roach_134210 | ||||||
| young_adult_Nanopore_Roach_135333 | ||||||
| young_adult_Nanopore_Roach_138247 | ||||||
| male_Nanopore_Roach_29288 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_26363 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_16737 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_111028 | ||||||
| L4_Nanopore_Roach_51039 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_96680 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_73854 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_12765 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_101891 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_7875 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_24842 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_25435 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_102966 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_115836 | ||||||
| L1_Nanopore_Roach_64659 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_62755 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_25314 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_11766 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_81470 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_14192 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_110194 | ||||||
| L1_Nanopore_Li_148162 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_217178 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_91099 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_140676 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF002C1_1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_195869 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_186108 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_135083 | Inferred_automatically | transcript_builder.pl | ||||
| yk522a4.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_44692 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR002C1_1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_146756 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_149055 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_60787 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_31325 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_305652 | Inferred_automatically | transcript_builder.pl | ||||
| yk1275a10.5 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1282|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| CK581051 | Inferred_automatically | transcript_builder.pl | ||||
| FN896317 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_206283 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_172013 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_71950 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_179130 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_37576 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_177588 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_32015 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_210785 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_372788 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00085838 | |||||
| WBRNAi00022431 | ||||||
| WBRNAi00110886 | ||||||
| WBRNAi00071585 | ||||||
| WBRNAi00034956 | ||||||
| WBRNAi00112155 | ||||||
| WBRNAi00071874 | ||||||
| WBRNAi00076622 | ||||||
| WBRNAi00052012 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Signal recognition particle receptor subunit beta | Accession_evidence | UniProt | TR:Q22013 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf006272 | |||||
| Method | curated |
