WormBase Tree Display for CDS: K06A1.4
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| K06A1.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K06A1 | |||
| Structure | Source_exons | 1 | 345 | |||
| 1224 | 1386 | |||||
| 1475 | 1606 | |||||
| 2043 | 2440 | |||||
| 2489 | 2685 | |||||
| 2733 | 2864 | |||||
| 2913 | 3028 | |||||
| 3075 | 3226 | |||||
| 3273 | 3367 | |||||
| 3419 | 3428 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q09587 | ||
| UniProt | UniProtAcc | Q09587 | ||||
| UniProt_GCRP | UniProtAcc | Q09587 | ||||
| AlphaFold | entry | Q09587 | ||||
| NCBI_protein | GI_number | GI:351064270 | ||||
| TREEFAM | TREEFAM_ID | TF321941 | ||||
| Protein_id | CHROMOSOME_II | CCD72612 | 1 | |||
| DB_remark | NHR-22 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR001723 (Nuclear hormone receptor), IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00003621 | ||||
| Corresponding_transcript | K06A1.4.1 | |||||
| Corresponding_protein | CE18017 | |||||
| Corresponding_PCR_product | cenix:200-e7 | |||||
| mv_K06A1.4 | ||||||
| sjj_K06A1.4 | ||||||
| smd_K06A1.4 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | male_Nanopore_Roach_129905 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_101588 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_109005 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_56371 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_5993 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_89793 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_86976 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_45746 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_81685 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_86400 | Inferred_automatically | transcript_builder.pl | ||||
| yk1154e08.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_272306 | Inferred_automatically | transcript_builder.pl | ||||
| CK576384 | Inferred_automatically | transcript_builder.pl | ||||
| CB102572 | Inferred_automatically | transcript_builder.pl | ||||
| CB102584 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_148960 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_270877 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_238547 | Inferred_automatically | transcript_builder.pl | ||||
| yk1373e12.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1484f12.5 | Inferred_automatically | transcript_builder.pl | ||||
| EC037127 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_169644 | Inferred_automatically | transcript_builder.pl | ||||
| AF408758 | Inferred_automatically | transcript_builder.pl | ||||
| yk325g8.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1373e12.3 | Inferred_automatically | transcript_builder.pl | ||||
| CK589102 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_152465 | Inferred_automatically | transcript_builder.pl | ||||
| CK576331 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_130643 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR120B10_1 | Inferred_automatically | transcript_builder.pl | ||||
| EC007286 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_259186 | Inferred_automatically | transcript_builder.pl | ||||
| AF273772 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_7879 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG3027|c0_g1_i2 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_159746 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_234238 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_8238 | Inferred_automatically | transcript_builder.pl | ||||
| yk324h4.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk325g8.5 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF120B10_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_143965 | Inferred_automatically | transcript_builder.pl | ||||
| CB102571 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_45905 | Inferred_automatically | transcript_builder.pl | ||||
| CK579559 | Inferred_automatically | transcript_builder.pl | ||||
| CK576387 | Inferred_automatically | transcript_builder.pl | ||||
| EB993311 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00007404 | |||||
| WBRNAi00050017 | ||||||
| WBRNAi00107362 | ||||||
| WBRNAi00070204 | ||||||
| WBRNAi00063369 | ||||||
| WBRNAi00063357 | ||||||
| WBRNAi00016650 | ||||||
| WBRNAi00115772 | ||||||
| WBRNAi00034000 | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | Nuclear hormone receptor family member nhr-22 | Accession_evidence | UniProt | SP:Q09587 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
