WormBase Tree Display for CDS: F21C3.3
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| F21C3.3 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F21C3 | |||
| Structure | Source_exons | 1 | 123 | |||
| 168 | 305 | |||||
| 380 | 511 | |||||
| DB_info | Database | SwissProt | UniProtAcc | P53795 | ||
| UniProt | UniProtAcc | P53795 | ||||
| UniProt_GCRP | UniProtAcc | P53795 | ||||
| AlphaFold | entry | P53795 | ||||
| NCBI_protein | GI_number | GI:3876127 | ||||
| TREEFAM | TREEFAM_ID | TF314862 | ||||
| Protein_id | CHROMOSOME_I | CAA95802 | 1 | |||
| DB_remark | HINT-1 protein; contains similarity to Pfam domain PF01230 (HIT domain); contains similarity to Interpro domains IPR001310 (Histidine triad (HIT) protein), IPR011146 (HIT-like domain), IPR036265 (HIT-like superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00009002 | ||||
| Corresponding_transcript | F21C3.3.1 | |||||
| F21C3.3.2 | ||||||
| Corresponding_protein | CE05678 | |||||
| Corresponding_PCR_product | cenix:125-g10 | |||||
| mv_F21C3.3 | ||||||
| sjj_F21C3.3 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA | male_Nanopore_Roach_110446 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_116737 | ||||||
| male_Nanopore_Roach_117279 | ||||||
| male_Nanopore_Roach_117566 | ||||||
| young_adult_Nanopore_Roach_29456 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_48430 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_89121 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_70130 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_29401 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_76369 | ||||||
| L1_Nanopore_Roach_17658 | ||||||
| L1_Nanopore_Roach_41872 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_66261 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_25401 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_74084 | ||||||
| male_Nanopore_Roach_47659 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_24943 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_70773 | ||||||
| L4_Nanopore_Roach_48315 | ||||||
| male_Nanopore_Roach_21069 | ||||||
| adult_Nanopore_Roach_72197 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_42957 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_16803 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_26470 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_74708 | ||||||
| adult_Nanopore_Roach_78721 | ||||||
| adult_Nanopore_Roach_77815 | ||||||
| L3_Nanopore_Roach_68146 | ||||||
| L3_Nanopore_Roach_67849 | ||||||
| L3_Nanopore_Roach_71805 | ||||||
| L1_Nanopore_Roach_38214 | ||||||
| L1_Nanopore_Roach_25533 | Inferred_automatically | transcript_builder.pl | ||||
| FN907620 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_127305 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1681|c5_g4_i1 | Inferred_automatically | transcript_builder.pl | ||||
| FN892179 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_73593 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_226621 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_261969 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_228903 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_225804 | Inferred_automatically | transcript_builder.pl | ||||
| EC014555 | Inferred_automatically | transcript_builder.pl | ||||
| FN892180 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1681|c5_g3_i1 | Inferred_automatically | transcript_builder.pl | ||||
| FN886934 | Inferred_automatically | transcript_builder.pl | ||||
| FN901012 | Inferred_automatically | transcript_builder.pl | ||||
| FN883156 | Inferred_automatically | transcript_builder.pl | ||||
| FN886933 | Inferred_automatically | transcript_builder.pl | ||||
| FN904118 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_279197 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF071A12_1 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1681|c5_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
| FN872041 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_250911 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1681|c5_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR071A12_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_115312 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_203679 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_232204 | Inferred_automatically | transcript_builder.pl | ||||
| FN886932 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00045181 | |||||
| WBRNAi00003411 | ||||||
| WBRNAi00092968 | ||||||
| WBRNAi00076321 | ||||||
| WBRNAi00031208 | ||||||
| WBRNAi00116531 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Histidine triad nucleotide-binding protein 1 | Accession_evidence | UniProt | SP:P53795 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf016129 | |||||
| Method | curated |
