WormBase Tree Display for CDS: F17C11.10
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| F17C11.10 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F17C11 | |||
| Structure | Source_exons | 1 | 84 | |||
| 131 | 642 | |||||
| 693 | 926 | |||||
| 975 | 1086 | |||||
| 1132 | 1315 | |||||
| 1360 | 1673 | |||||
| 1718 | 3411 | |||||
| 3476 | 3647 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q19520 | ||
| UniProt | UniProtAcc | Q19520 | ||||
| UniProt_GCRP | UniProtAcc | Q19520 | ||||
| AlphaFold | entry | Q19520 | ||||
| NCBI_protein | GI_number | GI:3876062 | ||||
| TREEFAM | TREEFAM_ID | TF105988 | ||||
| Protein_id | CHROMOSOME_V | CAA96632 | 1 | |||
| DB_remark | CTF-4 protein; contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF12341 (Minichromosome loss protein, Mcl1, middle region); contains similarity to Interpro domains IPR001680 (WD40 repeat), IPR036322 (WD40-repeat-containing domain superfamily), IPR022100 (Minichromosome loss protein Mcl1, middle region), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00008921 | ||||
| Corresponding_transcript | F17C11.10.1 | |||||
| Corresponding_protein | CE05657 | |||||
| Corresponding_PCR_product | cenix:11-e11 | |||||
| mv_F17C11.10 | ||||||
| sjj_F17C11.10 | ||||||
| Corresponding_oligo_set (19) | ||||||
| Matching_cDNA | male_Nanopore_Roach_148611 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_154704 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_155182 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_21681 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_70361 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_128442 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_128979 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_138062 | ||||||
| young_adult_Nanopore_Roach_138983 | ||||||
| adult_Nanopore_Roach_106158 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_40649 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_102616 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_66560 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_100158 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_105732 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_101166 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_95978 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_96342 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_18465 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_100194 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_70093 | ||||||
| adult_Nanopore_Roach_80056 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_55381 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_37633 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_102215 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_37005 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_101546 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_106542 | ||||||
| male_Nanopore_Roach_22111 | Inferred_automatically | transcript_builder.pl | ||||
| yk3g2.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk221a8.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk132b12.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_313047 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_178508 | Inferred_automatically | transcript_builder.pl | ||||
| yk1311g03.5 | Inferred_automatically | transcript_builder.pl | ||||
| RST5_373540 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_52849 | Inferred_automatically | transcript_builder.pl | ||||
| yk1693f02.3 | Inferred_automatically | transcript_builder.pl | ||||
| RST3_378448 | Inferred_automatically | transcript_builder.pl | ||||
| yk5d3.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_53687 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_350853 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_21708 | Inferred_automatically | transcript_builder.pl | ||||
| yk326b5.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_22818 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_19936 | Inferred_automatically | transcript_builder.pl | ||||
| yk132b12.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_357966 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_342411 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_371370 | Inferred_automatically | transcript_builder.pl | ||||
| yk1534h05.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk221a8.5 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1361|c9_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_321406 | Inferred_automatically | transcript_builder.pl | ||||
| yk73e7.3 | Inferred_automatically | transcript_builder.pl | ||||
| FN875736 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_160594 | Inferred_automatically | transcript_builder.pl | ||||
| yk5d3.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk326b5.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_98123 | Inferred_automatically | transcript_builder.pl | ||||
| FN879446 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_147579 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_111638 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00013456 | |||||
| WBRNAi00108113 | ||||||
| WBRNAi00007584 | ||||||
| WBRNAi00094296 | ||||||
| WBRNAi00108114 | ||||||
| WBRNAi00044871 | ||||||
| WBRNAi00108126 | ||||||
| WBRNAi00094214 | ||||||
| WBRNAi00108115 | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | Minichromosome loss protein Mcl1 middle region domain-containing protein | Accession_evidence | UniProt | TR:Q19520 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf027769 | |||||
| Method | curated |
