WormBase Tree Display for CDS: C16C10.3
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| C16C10.3 | Evidence | Inferred_automatically | make_isoforms.pl | ||
|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C16C10 | ||
| Structure | Source_exons | 1 | 109 | ||
| 161 | 371 | ||||
| 417 | 1370 | ||||
| 1420 | 1944 | ||||
| 1992 | 2940 | ||||
| 2986 | 3176 | ||||
| 3226 | 3385 | ||||
| DB_info | Database | SwissProt | UniProtAcc | Q09249 | |
| UniProt | UniProtAcc | Q09249 | |||
| UniProt_GCRP | UniProtAcc | Q09249 | |||
| AlphaFold | entry | Q09249 | |||
| NCBI_protein | GI_number | GI:3874381 | |||
| TREEFAM | TREEFAM_ID | TF318801 | |||
| Protein_id | CHROMOSOME_III | CAA86741 | 1 | ||
| DB_remark | HRDE-1 protein; contains similarity to Pfam domains PF02170 (PAZ domain), PF02171 (Piwi domain); contains similarity to Interpro domains IPR003165 (Piwi domain), IPR003100 (PAZ domain), IPR036085 (PAZ domain superfamily), IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00007624 | |||
| Corresponding_transcript | C16C10.3.1 | ||||
| Corresponding_protein | CE01494 | ||||
| Corresponding_PCR_product | TH:300F6 | ||||
| cenix:300-f6 | |||||
| mv_C16C10.3 | |||||
| sjj2_C16C10.3 | |||||
| sjj_C16C10.3 | |||||
| smd_C16C10.3 | |||||
| Corresponding_oligo_set (13) | |||||
| Matching_cDNA | male_Nanopore_Roach_97378 | ||||
| male_Nanopore_Roach_151289 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_20485 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_28882 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_34262 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_48705 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_72311 | |||||
| young_adult_Nanopore_Roach_73417 | |||||
| young_adult_Nanopore_Roach_74308 | |||||
| young_adult_Nanopore_Roach_75753 | |||||
| young_adult_Nanopore_Roach_76305 | |||||
| young_adult_Nanopore_Roach_76391 | |||||
| young_adult_Nanopore_Roach_76497 | |||||
| young_adult_Nanopore_Roach_77927 | |||||
| young_adult_Nanopore_Roach_78003 | |||||
| young_adult_Nanopore_Roach_81412 | Inferred_automatically | transcript_builder.pl | |||
| young_adult_Nanopore_Roach_124759 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_65653 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_57930 | |||||
| adult_Nanopore_Roach_15959 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_62427 | |||||
| adult_Nanopore_Roach_102658 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_61107 | |||||
| male_Nanopore_Roach_47880 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_61020 | |||||
| adult_Nanopore_Roach_17392 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_61199 | |||||
| adult_Nanopore_Roach_57125 | |||||
| adult_Nanopore_Roach_60069 | |||||
| adult_Nanopore_Roach_56864 | |||||
| adult_Nanopore_Roach_91439 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_59145 | |||||
| adult_Nanopore_Roach_60719 | |||||
| adult_Nanopore_Roach_62556 | |||||
| L1_Nanopore_Roach_42088 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_59480 | |||||
| adult_Nanopore_Roach_56925 | |||||
| adult_Nanopore_Roach_29006 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_41360 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_61959 | |||||
| adult_Nanopore_Roach_60871 | |||||
| adult_Nanopore_Roach_24433 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_57636 | |||||
| adult_Nanopore_Roach_59556 | |||||
| yk558c10.5 | Inferred_automatically | transcript_builder.pl | |||
| yk209h9.5 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_285570 | Inferred_automatically | transcript_builder.pl | |||
| yk1476g04.3 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_262343 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_260804 | Inferred_automatically | transcript_builder.pl | |||
| EC020514 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_336404 | Inferred_automatically | transcript_builder.pl | |||
| FN883102 | Inferred_automatically | transcript_builder.pl | |||
| FN890001 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_31409 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_229185 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_292415 | Inferred_automatically | transcript_builder.pl | |||
| FN896174 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_251212 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_215708 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_221028 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_306557 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_238746 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_209124 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_36932 | Inferred_automatically | transcript_builder.pl | |||
| FN890002 | Inferred_automatically | transcript_builder.pl | |||
| yk664h4.5 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_231699 | Inferred_automatically | transcript_builder.pl | |||
| yk1487d12.3 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_317757 | Inferred_automatically | transcript_builder.pl | |||
| YA_Nanopore_Li_172929 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_62454 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_186543 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_30771 | Inferred_automatically | transcript_builder.pl | |||
| yk275b8.5 | Inferred_automatically | transcript_builder.pl | |||
| elegans_PE_SS_GG2425|c9_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_167004 | Inferred_automatically | transcript_builder.pl | |||
| EC037925 | Inferred_automatically | transcript_builder.pl | |||
| EM_Nanopore_Li_298983 | Inferred_automatically | transcript_builder.pl | |||
| FN896173 | Inferred_automatically | transcript_builder.pl | |||
| yk1476g04.5 | Inferred_automatically | transcript_builder.pl | |||
| EC006185 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_142628 | Inferred_automatically | transcript_builder.pl | |||
| yk209e7.5 | Inferred_automatically | transcript_builder.pl | |||
| RNAi_result | WBRNAi00005060 | ||||
| WBRNAi00085094 | |||||
| WBRNAi00098174 | |||||
| WBRNAi00027177 | |||||
| WBRNAi00040678 | |||||
| WBRNAi00010828 | |||||
| WBRNAi00028955 | |||||
| WBRNAi00007936 | |||||
| Microarray_results (16) | |||||
| RNASeq_FPKM (74) | |||||
| Associated_feature | WBsf015700 | ||||
| Method | curated |
