WormBase Tree Display for CDS: C01B12.1
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| C01B12.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C01B12 | |||
| Structure | Source_exons | 1 | 162 | |||
| 215 | 874 | |||||
| 927 | 1001 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O17209 | ||
| UniProt | UniProtAcc | O17209 | ||||
| UniProt_GCRP | UniProtAcc | O17209 | ||||
| AlphaFold | entry | O17209 | ||||
| NCBI_protein | GI_number | GI:373218508 | ||||
| Protein_id | CHROMOSOME_II | CCD61131 | 1 | |||
| DB_remark | SQT-2 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00005017 | ||||
| Corresponding_transcript | C01B12.1.1 | |||||
| Corresponding_protein | CE07789 | |||||
| Corresponding_PCR_product | cenix:132-g2 | |||||
| mv_C01B12.1 | ||||||
| sjj_C01B12.1 | ||||||
| Corresponding_oligo_set (19) | ||||||
| Matching_cDNA | male_Nanopore_Roach_151243 | Inferred_automatically | transcript_builder.pl | |||
| L3_Nanopore_Roach_96091 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_68446 | ||||||
| L2_Nanopore_Roach_56027 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_101291 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_64610 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_74284 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_35711 | ||||||
| L2_Nanopore_Roach_104500 | ||||||
| L4_Nanopore_Roach_36067 | ||||||
| L2_Nanopore_Roach_44014 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_63916 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_104261 | ||||||
| L4_Nanopore_Roach_68089 | ||||||
| L4_Nanopore_Roach_66642 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_98280 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_93260 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_98594 | ||||||
| FN906998 | Inferred_automatically | transcript_builder.pl | ||||
| yk170e6.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_274878 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_366136 | Inferred_automatically | transcript_builder.pl | ||||
| EB995448 | Inferred_automatically | transcript_builder.pl | ||||
| EB999143 | Inferred_automatically | transcript_builder.pl | ||||
| yk1669c03.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1414b01.3 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_301120 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_351045 | Inferred_automatically | transcript_builder.pl | ||||
| yk1669c03.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_317217 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG7686|c7_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF116C11_1 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_346019 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR116C11_1 | Inferred_automatically | transcript_builder.pl | ||||
| FN906999 | Inferred_automatically | transcript_builder.pl | ||||
| EC005402 | Inferred_automatically | transcript_builder.pl | ||||
| FN906810 | Inferred_automatically | transcript_builder.pl | ||||
| CK576847 | Inferred_automatically | transcript_builder.pl | ||||
| EC034999 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (12) | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:O17209 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
