WormBase Tree Display for CDS: K04G2.7a
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| K04G2.7a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K04G2 | |||
| Structure | Source_exons | 1 | 160 | |||
| 1084 | 1177 | |||||
| 1233 | 1330 | |||||
| 1385 | 1614 | |||||
| 1660 | 1851 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q21226 | ||
| UniProt | UniProtAcc | Q21226 | ||||
| UniProt_GCRP | UniProtAcc | Q21226 | ||||
| AlphaFold | entry | Q21226 | ||||
| NCBI_protein | GI_number | GI:61855431 | ||||
| Protein_id | CHROMOSOME_I | CAB00044 | 2 | |||
| DB_remark | contains similarity to Pfam domain PF03221 (Tc5 transposase DNA-binding domain); contains similarity to Interpro domains IPR006600 (HTH CenpB-type DNA-binding domain), IPR009057 (Homeobox-like domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Protein_id_evidence | BP:CBP22053 | ||||
| Visible | Gene | WBGene00010566 | ||||
| Corresponding_transcript | K04G2.7a.1 | |||||
| Corresponding_protein | CE38203 | |||||
| Corresponding_PCR_product | cenix:34-b4 | |||||
| mv_K04G2.7 | ||||||
| sjj_K04G2.7 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | L3_Nanopore_Roach_14995 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Roach_79216 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_74312 | ||||||
| L2_Nanopore_Roach_44260 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_74532 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_51497 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_101073 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_15349 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG2018|c2_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR074E4_1 | Inferred_automatically | transcript_builder.pl | ||||
| FN879064 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_11773 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF074E4_1 | Inferred_automatically | transcript_builder.pl | ||||
| EC018208 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_275246 | Inferred_automatically | transcript_builder.pl | ||||
| FN879067 | Inferred_automatically | transcript_builder.pl | ||||
| FN665051 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_13213 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00033967 | |||||
| WBRNAi00049940 | ||||||
| WBRNAi00003921 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | HTH CENPB-type domain-containing protein | Accession_evidence | UniProt | TR:Q21226 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 11 Mar 2008 00:00:00 | WBPerson1983 | ||||
| Remark | [050225 ar2] Added 5' exon based on similarity to CBP22053 | Protein_id_evidence | BP:CBP22053 | |||
| Curator_confirmed | WBPerson1847 | |||||
| Method | curated |
